RNA id: AMCG00001037


Basic Information

Item Value
RNA id AMCG00001037
length 1494
RNA type mRNA
GC content 0.50
exon number 10
gene id AMCG00001037
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12697219 ~ 12707783 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGGATTCAAGGAAAGAGCAGTGAGCAGGAGTGGCCTCTCTCTGCTCCCGCTCCTGCCCCTGCCCTCCCTGTGCCTCTCCCTGATCCCGCCCTGGCCCTCCCTGTACCTCTCCCTGATCCCGCCCTGGCCCTCCCTGTACCTCTCCCTGCTCCCACTCCTGTCTCTCCCCCGGGGAGTTCTCTTATACCACTCCACTATCAACAACATACAAGCAGGACTCAGCCTGAATAAACAGATTATTACAGACGCACTGAAGTTTCTGATTGCAAGAGTCAAAATGGTGCACAAATGTTCAGTTGGAGAACGTGTCATCTTTGGCAAGAACTCAGACCGGCCTTGCGATGAAGTACAGGAGGTGGTTTATTTCCCTGCTGCAAAATACAGTGCCGGAGACAAACTGGAGTGCACATACATCAAGATTGACCAGGTTCCACAGACGTACGCAGTGGTGCTGAGCCGACCGGCCTGGCTGTGGGGAGCTGAGATGGGGGCAAACGAACACCAAGTGTGTATAGGCAATGAAGCCGTGTGGGGGAAGGATGAGGTCAGCGACTCGGAAGCTCTGCTTGGCATGGATCTGGTCCGACTTGGTCTTGAAAGGGCAGACACCGCCGAGAAGGCTCTGGATGTCATCGTGGACCTACTCGAAAAGTACGGCCAGGGAGGGAACTGCATGGAAGATGAGTGCAGCTTTAATTATCACAACAGCTTCCTGATCACGGACAGGACAGAAGCCTGGGTTTTGGAGACGTCTGGGAAGTACTGGGCAGCAGAGAAAATAACAGAGGGACCTCGCAACATTTCAAACCAGTTCTCAATCACTACCAGGATCGACAAGGAGCACCCAGAGCTCAGAGAGTACGCCAGAAGCAAAGGCTGGTGGGATTCAAAGAGGGAGTTCAATTTTGCAGGCGTTTTTTCATACATGAACACAGCCAGAATCGAtgcgtctggcagcagatattGTAAAGGCCGCAAACTtctggagaaaaataaagGAAACATTACAGCTGAAACCATGATGGAAATCCTCAGAGATAAAGAGAGTGGCATCAATATGGAGGGTGGATTCATGACAACTGGGAGCATGGTCTCCATTCTGCCCAGAGACCCCACACTGCCTGCCGTGCACTATTTCACTGCAACGCCAGATCCCGAAAGGTCTGTTTTCAAGCCCTTcgtttttgtgaaaaatattaCACAGCTGAAAAAAACATGCTCACCTAGCTATGGCCCAGAAGACCCTGTGAAGAAAACCCCCCGCTTTCAGTCAAAGCCAGACCGCAAACATGAGTTGTACAAGAAACACGAAGAGGCAGCTGCGAAAATGGAGGGGAAGGGTGCGGAAATGTTGAAGAATATGAGACGGcttgaaaaagagaaaatggcAGAAATGGATCAGTTTTTACAAAGTGGTATTGAAGACACTACATTAGTTGTGCATATTTTTGCCAACACCACTGAAGAAGAATTAAAAGTGTACAGCTAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016805 dipeptidase activity molecular_function

KEGG:

id description
K14358 SCRN; secernin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160610 lncRNA upstream 21045 12638985 ~ 12676174 (+) True G128107
TU160600 lncRNA upstream 42047 12606039 ~ 12655172 (+) True G128101
TU160612 lncRNA upstream 57331 12638985 ~ 12639888 (+) False G128107
TU160571 lncRNA upstream 156901 12540081 ~ 12540318 (+) True G128074
TU160510 lncRNA upstream 335067 12360915 ~ 12362152 (+) False AMCG00001022
TU160703 lncRNA downstream 129868 12837651 ~ 12841008 (+) False G128171
TU160704 lncRNA downstream 129868 12837651 ~ 12841008 (+) True G128171
TU160823 lncRNA downstream 649708 13357491 ~ 13382644 (+) False G128255
TU160825 lncRNA downstream 649708 13357491 ~ 13359738 (+) True G128255
TU160870 lncRNA downstream 753883 13461666 ~ 13463482 (+) True G128294
AMCG00001036 mRNA upstream 6563 12688778 ~ 12690656 (+) True AMCG00001036
AMCG00001025 mRNA upstream 161153 12529789 ~ 12536066 (+) True AMCG00001025
AMCG00001028 mRNA upstream 168115 12523818 ~ 12529104 (+) True AMCG00001028
AMCG00001027 mRNA upstream 179267 12497386 ~ 12517952 (+) True AMCG00001027
AMCG00001026 mRNA upstream 202002 12469940 ~ 12495217 (+) True AMCG00001026
AMCG00001047 mRNA downstream 104631 12812414 ~ 12813367 (+) True AMCG00001047
AMCG00001052 mRNA downstream 289329 12997112 ~ 12998946 (+) True AMCG00001052
AMCG00001050 mRNA downstream 295152 13002935 ~ 13004035 (+) True AMCG00001050
AMCG00001049 mRNA downstream 301913 13009696 ~ 13023750 (+) True AMCG00001049
AMCG00001053 mRNA downstream 321260 13029043 ~ 13029447 (+) True AMCG00001053
TU160309 other upstream 685794 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 2543032 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 4077024 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 11000972 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 11096580 1599696 ~ 1600639 (+) False AMCG00000723
TU161370 other downstream 2462128 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 2701329 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 5315277 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 5838110 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 5847368 18555151 ~ 18558174 (+) False G129442

Expression Profile