RNA id: TU160682


Basic Information

Item Value
RNA id TU160682
length 2506
lncRNA type sense_over
GC content 0.41
exon number 4
gene id AMCG00001039
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12725694 ~ 12732601 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNNCCCAGGCAGGCCAGGACCCCCTCCACTGCCACCCACTCCTGGTGGGGATGAGGACATCCCCAGGCTGCCCCAGAGGAACCTGTCCCTCAACTCCCATGCCCCTGCACCCCCGCCAGGACGGACTTGCCCTCTCCCACCCCCATCCAATGAGAGACCCCCGCCTCCAGTCAGAGACCCCCCTGGACGCTCAGGACCCCTGCCCCCTCCACCTCCAAGCGGCAGAAATGGAGGAAGTGTGAGGTCATCGCCAGCACCCCCACCACCCAACAGACCCGGAGCAGAGCCCCCCCGAGGAGGACATCGGCCACCTCTCCCCCCTGACAGGCCAGGGGTTGGGGGCCCCCCACCGCCCCCACCACCGATGAGGAACGGTTACCAGGATGCTCCTCACACAGCAGGGGACGCAGATGATTGGGAAGGCAGATTTTCTTTCCATCCCATCTCAGACTTGCCCCCACCAGAGCCCTACGTGCCCTCTCAGAAGACTTACCCCAGCAAACTGGCAAAGAGTGAGAGCAGAGGCTCCGGAAGAAAGGAAAGAGGCGCCCCTCCCCTCCCACCAATACCCAGGTGAAATGAAGAGCTCCCAGCGGGCAGCGCTTCACCTCTCGGGACCACTTCTGTTTCTCTATTAAAGACCATATCTGCAGTTATCTCTTTCAGCttaacatttccatttcttttgtGCAGAAAATGTGGAGCGTGCACATTGGTTAGAGTAACGTGCATTGCTGGAGTTTAAAGCCCATTATCGTCATTTCCAAATTTGCACAAAGTGCCTTACAAAATGCAATTGTTTACAAAACTATAGGACTTGACTGCCTTTGTGTTGTCAACCCCCCCAAATGTGTTATATCTGAGACTTTCCTCAATACAgggacatttttaaacactttgtaaatgtcatgttttgttttgatctgaaAATATTGTTGGTGCAATACAGGCAGTGTCAATTACAAAAGCTTTCATGAAGTTCTATAAAGCTGTTAATTCCTATGCTTATTCAGGTTCAAAACCAAGAGAGTTCAAATAGAAAGTGTGTTGACTTAAACCAATGGAGTCTAAATAATGCCACCATTTTAAAGCcactttttccatttattttatatctgcatatttttgtattgtatttgtggAATGAGAGAACTCTCCCTGGAGGAGAGAACAGTAtagatataaaatgtaatggtgGTTCAATTTCAGTCTCCCACTTATGTCTATAAAATAGGTTGGGGTTTATTTTGAAGATTATAAATGGggatatataatgtaattaagtCTTGGGTGACTAACTAGGCCATCTATATTATTGTCAATAGCAGTAAATAGGTCTGAAAATGTTTATAGCAGAGCTTTGTCATAATTATAGCTTTTGTTGGTAATCATTATAGTTTAAcctaaaattttaaaaatattgtttttcagcaCACAGTATTATGCTTGGTCACAGCTTACACTAATGGACACccattcttaattaattgatgtatgaataccataAAAATAAGACCTGAATACTTTCTGCACTTCATCATGTCTGCTGTTAATGTATAATAGTCAGGGTGGTTAGAGGGTTATGGGCTAGGACTGGGGTCAACATCTGCCTCAGTGTAAGTGCATGAGGCATTAATGTCGTGTTTCTGTGGGATTCAAACATTAACTCATTAAGGATTGAgtcccattattgtaaagtgttaccctatgctttaataataacataaaagttcagaagatttttttttttttttgtagaccCTGTTAAATTGCATGAACTCTACACGGAGCTGCCTGTAGAatcatctttttcattttcctttgatTTCTAACATTATAGTCTAGTAAATATGATGTATCAGGGAACTTTGTGATATGAAATGTGTCTGATAGTGGACACTGTTTATCAGTGTTAAAGTGATCCAATTGACACACAATGCTTTTCTTAATATTGTTGATTAGGAATAAAAACACGTTTTGATCTCTACagaaaacaacttatttacatgttaaaaaaaaacattatctggcaatttgtaaatgcaatataataaaaaaaagatatttccTAACCTTCTCATCAAGGCCAAGGTACCTATGGAAATGACACCTGTGTGGAGAGGAGTGGAGACCGGCTGTACTACATGAAGTGCTGCAGTATGCATTTTGACAATTAACCTATCAAGACTATAACATGTAGTCGGATTCATATCTTGTGTTCTGATCACATGACCGCGCTCCAGTGGTATAGCAGTCTAGTATAGTGAAGTATCTGCACACAATGTGTTCATGACAACCTGTAGCTGCAGTTAATCTTATGCATTTCATCGaattcttgtgtttgtttgttttttggtgacattacattttaaaaccaacatGTGTATTTAATAAGTGTcacattataattgtatttataatcgGGTCAAGGTTGGAAAGTTGACTGCTGTGCTGCATTGTTTGAAAAGGCTtaggttttcaaaataaatagacacTGATATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160632 lncRNA downstream 28026 12697177 ~ 12697668 (-) False AMCG00001041
TU160562 lncRNA downstream 230479 12493178 ~ 12495215 (-) True G128070
TU160530 lncRNA downstream 338110 12358559 ~ 12387584 (-) False G128045
TU160531 lncRNA downstream 338110 12358559 ~ 12387584 (-) True G128045
TU160449 lncRNA downstream 567211 12154508 ~ 12158483 (-) True G127976
TU160675 lncRNA upstream 33725 12764912 ~ 12810017 (-) True G128155
TU160735 lncRNA upstream 268395 12999582 ~ 12999876 (-) True G128191
TU160764 lncRNA upstream 333953 13065140 ~ 13070429 (-) True G128212
TU160793 lncRNA upstream 475687 13206874 ~ 13211855 (-) True G128237
TU160800 lncRNA upstream 516702 13247889 ~ 13280730 (-) True G128242
AMCG00001040 mRNA downstream 4015 12705465 ~ 12721679 (-) True AMCG00001040
AMCG00001041 mRNA downstream 21784 12697562 ~ 12703910 (-) True AMCG00001041
AMCG00001030 mRNA downstream 46266 12676022 ~ 12679428 (-) True AMCG00001030
AMCG00001032 mRNA downstream 67305 12652611 ~ 12658389 (-) True AMCG00001032
AMCG00001034 mRNA downstream 83712 12636744 ~ 12641982 (-) True AMCG00001034
AMCG00001042 mRNA upstream 1432 12732619 ~ 12739464 (-) True AMCG00001042
AMCG00001038 mRNA upstream 21226 12752413 ~ 12760367 (-) True AMCG00001038
AMCG00001044 mRNA upstream 34472 12765659 ~ 12777013 (-) True AMCG00001044
AMCG00001043 mRNA upstream 58148 12789335 ~ 12795048 (-) True AMCG00001043
AMCG00001046 mRNA upstream 83254 12814441 ~ 12836485 (-) True AMCG00001046
TU159975 other downstream 2025346 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 2447483 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 3306369 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 5079972 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 5991877 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 997 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 625796 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 1861512 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 2448054 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 2632880 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile