RNA id: AMCG00001040


Basic Information

Item Value
RNA id AMCG00001040
length 2496
RNA type mRNA
GC content 0.50
exon number 15
gene id AMCG00001040
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12705465 ~ 12721679 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCTGGTTCGTGAAGCTGAGCTTTCGGGGCTCCTAGGCCCTGCAGCCATGGCGGACAGATATTTGCTGAACCAATCCCCCAACTCCACCTCGTCTTCTCCATCCATGTCAATAGATCAGCTCTTCCCAGCCTTACTGGAATGCTTTGGGATCATCCTCTGTGGTTATGTTGCTGGGAGGGCGAACATTATAACCTCTTCCCAGGCCAAAGGGCTGGGGAATTTTGTCTCAAAATTTGCACTTCCAGCCTTACTGTTTAAGAACATGGTGCTGCTGGACTTTGCCAATGTCATCTGGTCTTTTCTGTATAGTATTCTCATTGCCAAGGTGGCCGTGTTTGTTATTGTCTGTGTTTTAACACTGCTGGTTGCCAGTCCGGAGAGTCGCTTGAGTAAAGCTGGTCTCTTCTCCATTTTTGCTACCCAAAGCAACGACTTTGCCTTGGGATACCCTATTGTGGAGGCGCTCTATAAGGATACGTACCCAGAGTACCTGCAGTATATTTACCTGGTGGCTCCCGTGTCCCTCATGATCCTGAACCCAATAGGGTTTGCCTTCTGTGAGATTCAGAAGTGGAGGGAGCACCGAGGCCAGCAGCACAACAAGCTGAAGATCGTGGGGGTCGTGGTCCTGCAGGTCCTGAAGAACCCCATCGTGTTCATGGTGGTCATTGGCATCGCCTCACACTTCATCCTGAGACAGAAGATCCCTGTCTTCATGGCCCAGTTTGTGGATGGCTTGGCAAACTCCTTCGGGGGATCTGCTCTGTTCTACCTCGGCCTCTCCATGGTTGGACAACTCAGGAAGCTCACCAAGTCCACCTTTGTTTCACTTATCCTGCTCATCACAGCCAAGCTGTTGGTGATGCCTCTGATCTGCAGGAATATGGTTGAACTGCTGGATAAGGGCAACAGTTCAGTGAACCACACCAGTCTCTCCAATTATGCATTTCTCTATGGAGTCTTCCCTACAGCTCCCAGTGTAGCAATCTATGCAGCCCAGTACAATATGGAGCTAGAAATTGTTACCTCAGGAATGGTCATAAGTACATTTGTTTCTGCTCCAATTATGTACGTTTCTGCTTGGTTACTGACAATACCATTAATGGATTCAAAGCGATTAGCAACTGCACTTCAAAGTGTCAGCTTTGACATAAGTATTGTCAGTTTAATTGCTGTGGTCTGGACTGTGACTGTCCTGCTTCTCAGCAAAAAATTTAAGAGGCTCCCTCACATGTTCACTATGAACCTGCTTGTGGCACAAtttcttgtcTGCGTTGGAATGATCTTGTGGAACTTTATTATAAAGCAAGACAACTTTATAAGCCAGATCCTGTCATTCATCCTACTCTACAGCTCCCTTTACAGCACTTACCTGTGGACAGgccTTATCGCACTTTCTCTGGTCCTAGTGAACAAGGACGATGAGCTAAAGGTTCAGCCCGCTGTCTTCATGATCGCAGGCTGGGGAATTCCAGCATTTATAGTTGGGATCCTTCTGATTGCTGGGGAGAAAATGCCTGACAACATTGATTCTGCTTTCTTTTATGGAAAACATCAGATCATCAGCACTGCTGTGGTGCTCTCCTGTAGTATCCTTCTGGCAGGAGCGTCACTGATGGGGCTCAGTAGAGGCAGACAAGACCCTGGCTATCAAGCTTTAGATCGCACCTCAATTACAGGAACCACAGAGGATCTGAGGACGCAGAATAGCCAGGACAGCCAGACGAGCCCTGAGGCAGCGCAAGAGGACATCAACGTTAACAGAGAGAGCTGTGCCTGTGAGCTGGCCAGGGGAGTGAATTGCTGCTCTGTTCAGCCAATGCCGGACATGATTGTCAGCACAAACCTGCACGAAACGCCAACCACACAGTCAGGTCAGTGTGTGAGCCACTGTGTGTCTCCCAGTTGTATCTTGGCGCAGGAggagcagctgctgcagagctCGGACCGGCAGCTGGCCAGACACGTGCTGCTGTGTCTGCTCCTCATCGTGGGCCTGTTCGCTGGCTTTTTTTCATTTGGTATTTTTGGTATGGATAAACATTTGATTATCCTACCCTTCAAAAAGAGACTGGCAAGTCTGTGGCAAAACCGAGACAAAGCAGAGGAACCGGACACTGCGGTCCCAGAGGAGATCAGGAtgacttgcacacagtttgtcaGATACCACCAGGAACAGTGTGTCCGGGACATAGTGCGGGAGAGAAGGTGTGGAGAGAAGAGTTTGTCGGGCGTTTTTTGGGGCAGTGATCTGGTGGAGTGGCTGGTCCGCGTTGGCCTGGCCCACGACCGCGGGGAGGCGGTGCTGTACGGAGAGCAGCTGATGCAGGGGGGGCTCCTGCAGCACATCACCGACGAGTTTGGGTTCCGGGATGAGAACCTGCACTACCGCTTCACAAAGCATGGCAGGACTGGAGCGGGACTGAGATACTTCCCAGACGTCTCCAAAACCCAGGCTTCTGTCCTGTCCGTGATCAGGAAGCTGTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160632 lncRNA downstream 7797 12697177 ~ 12697668 (-) False AMCG00001041
TU160562 lncRNA downstream 210250 12493178 ~ 12495215 (-) True G128070
TU160530 lncRNA downstream 317881 12358559 ~ 12387584 (-) False G128045
TU160531 lncRNA downstream 317881 12358559 ~ 12387584 (-) True G128045
TU160449 lncRNA downstream 546982 12154508 ~ 12158483 (-) True G127976
TU160682 lncRNA upstream 4015 12725694 ~ 12731187 (-) False AMCG00001039
TU160683 lncRNA upstream 4015 12725694 ~ 12731187 (-) False AMCG00001039
TU160685 lncRNA upstream 4015 12725694 ~ 12731187 (-) True AMCG00001039
TU160675 lncRNA upstream 43233 12764912 ~ 12810017 (-) True G128155
TU160735 lncRNA upstream 277903 12999582 ~ 12999876 (-) True G128191
AMCG00001041 mRNA downstream 1555 12697562 ~ 12703910 (-) True AMCG00001041
AMCG00001030 mRNA downstream 26037 12676022 ~ 12679428 (-) True AMCG00001030
AMCG00001032 mRNA downstream 47076 12652611 ~ 12658389 (-) True AMCG00001032
AMCG00001034 mRNA downstream 63483 12636744 ~ 12641982 (-) True AMCG00001034
AMCG00001031 mRNA downstream 87510 12606362 ~ 12617955 (-) True AMCG00001031
AMCG00001039 mRNA upstream 7687 12729366 ~ 12732601 (-) False AMCG00001039
AMCG00001042 mRNA upstream 10940 12732619 ~ 12739464 (-) True AMCG00001042
AMCG00001038 mRNA upstream 30734 12752413 ~ 12760367 (-) True AMCG00001038
AMCG00001044 mRNA upstream 43980 12765659 ~ 12777013 (-) True AMCG00001044
AMCG00001043 mRNA upstream 67656 12789335 ~ 12795048 (-) True AMCG00001043
TU159975 other downstream 2005117 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 2427254 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 3286140 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 5059743 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 5971648 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 10505 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 635304 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 1871020 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 2457562 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 2642388 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile