RNA id: TU160632


Basic Information

Item Value
RNA id TU160632
length 492
lncRNA type sense_over
GC content 0.43
exon number 1
gene id AMCG00001041
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12697177 ~ 12703910 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGGGGCAGGAGCGGGAGCAGAGAGAGGCCTGGGAGAAGGGACCACAGTGAGAGTGATAGGGAAAGCAGGCCGTCGCACAGGCAGGACCGCCACCGAAAGAGCTAGAGCGAGCAGACCAGTGATAGAGGGCACTCGCACATAACTAGCTGGCTAAGAGTGCAACAGTGAAAATCGGGaatttataaatagtttttcttgTACTCCACtgcaacatttttgttttttaaatacatttttagcaaGTGTTGATGTAAATACCGTGCTCTTTGCATGTTTCAGCATTTTGGATTCTTCTGTACAGCTGTATTCTGTTtggtttgtgctgcatttgacaattaaaaatgcatttgaaatgatttgtgCACTTAATGCAATTACTTACTACATTTTCAATTATCATGAGTCCTTCACCACTCCTGCTCACTGCTCTTTCCTTGAATCCAGACATCTGTTTGGGtctgtttgtgttgattttgcAGTAGAAtatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160562 lncRNA downstream 201962 12493178 ~ 12495215 (-) True G128070
TU160530 lncRNA downstream 309593 12358559 ~ 12387584 (-) False G128045
TU160531 lncRNA downstream 309593 12358559 ~ 12387584 (-) True G128045
TU160449 lncRNA downstream 538694 12154508 ~ 12158483 (-) True G127976
TU160341 lncRNA downstream 785355 11908986 ~ 11911822 (-) True G127899
TU160682 lncRNA upstream 28026 12725694 ~ 12731187 (-) False AMCG00001039
TU160683 lncRNA upstream 28026 12725694 ~ 12731187 (-) False AMCG00001039
TU160685 lncRNA upstream 28026 12725694 ~ 12731187 (-) True AMCG00001039
TU160675 lncRNA upstream 67244 12764912 ~ 12810017 (-) True G128155
TU160735 lncRNA upstream 301914 12999582 ~ 12999876 (-) True G128191
AMCG00001030 mRNA downstream 17749 12676022 ~ 12679428 (-) True AMCG00001030
AMCG00001032 mRNA downstream 38788 12652611 ~ 12658389 (-) True AMCG00001032
AMCG00001034 mRNA downstream 55195 12636744 ~ 12641982 (-) True AMCG00001034
AMCG00001031 mRNA downstream 79222 12606362 ~ 12617955 (-) True AMCG00001031
AMCG00001033 mRNA downstream 95180 12544443 ~ 12601997 (-) True AMCG00001033
AMCG00001040 mRNA upstream 7797 12705465 ~ 12721679 (-) True AMCG00001040
AMCG00001039 mRNA upstream 31698 12729366 ~ 12732601 (-) False AMCG00001039
AMCG00001042 mRNA upstream 34951 12732619 ~ 12739464 (-) True AMCG00001042
AMCG00001038 mRNA upstream 54745 12752413 ~ 12760367 (-) True AMCG00001038
AMCG00001044 mRNA upstream 67991 12765659 ~ 12777013 (-) True AMCG00001044
TU159975 other downstream 1996829 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 2418966 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 3277852 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 5051455 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 5963360 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 34516 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 659315 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 1895031 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 2481573 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 2666399 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile