RNA id: AMCG00001045


Basic Information

Item Value
RNA id AMCG00001045
length 2025
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00001045
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12837442 ~ 12841125 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTGTCTCCGATTCTCGGTTTCAATAAAGTTGCAGTGAAGTGACCTTGAGAGCCGCCATCCCAGCATCCGGGAGATTGCATAAATAGAAGTAGGCGCATGCGCAGTCGTTTCTAATCGGTTCGACCTCTGCTGCCGAGACAGACCCGGGTTTACGATCAAATCCcaactaaaataaatccaaGAAACATGTACGCCTGTGCTAAATTCGTCTCCACGCCGGCTCTGGTCCGTGCTGGATCCCGGGCTCTGTACAGACCCCTCTCTGCATCAGTGCTGTCTCGGCCAGAGGTCAGGACTGGAGAGggAAATACCGCACTTGTGAGCGGGCCACAgaactttttttctcaagtaGCACTCAGGGGCTTCCAGACCAGTGCTGTCAGCAGAGACATTGACACTGCTGCCAAGTTTATTGGTGCTGGTGCTGCCACAGTAGGAGTGGCTGGATCCGGTGCTGGGATTGGAACTGTTTTTGGCAGCCTTATCATTGGTTATGCCAGGAATCCCTCCCTAAAGCAGCAGCTGTTCTCCTATGCTATCCTGGGATTTGCCCTCTCTGAAGCCATGGGTCTGTTCTGTTTGATGGTTGCTTTCTTGATCTTGTTCGCCATGTAAAAATTCTGCTTTGGATGTTAACGTAAATAAGATTCCGATGTaactacatattttacagtggctACCAAAATTTGTTCTGTGTTGGTGTCATGAAAGTGTACATTTTCCAAGGTTTTGTTGAACActgtcaaaatacaaataaacgcATTGCAAGATTGTAACcaattacagaattaaaatacatgtttgatttatataaggtctaaaatacattttgtattttatgcatTGACTTCTTTCAACCTTAGTCACTAGATACTtcacaacatttcaaaatagcGGTTTGATTTCTGCATCTTTACTTGTGAAACATGTACTGAATTGAAGCATTATAGCAAAAGCACAGGTTGTTTTCATACTTTTCTGCAGGAGCATTTAGCAAACAATTTATTCAGAAGCAAACTCTTGACCGCTGTATCacttaaattgattaaaatttACCTTTCAATCTTACTGGTTATTCATGGCAGGTTTATTTTATACCTTGTAAGCTAAGTTGGCGCTCAGTAGGATATTTGCTTAAGGCTTTTCATGGACATACCTCACACACTCAACAGGTGACTGCACCATGTGGAATGGGTTAGTTCATAGTAAACACTGGGGGGGGGGAGCCAAATCATTCACCTAGTTTATAGTGGGCTTCTTCCAGTGTTTATATTAGCCTTGGTTGACCATCTGTGTAGTATTGTAAAGGCAGGTATTGATGCCTTTGACTAACTGTACCTGTAAATCTGTCcctatgtactgtacatttttgtattcagtacCCCCCTCCCTTCAGCAACCTACCCAATCCCACCCAACTAATagattacatttcctttttgtataAAGACAATACTACTAGGCTTGTTATAGCAGCTCATTTAATGGgtatcattttaatgttcttcAACATGCCTTCTGCACACATTAGTTTATGCCATCAGTGTGCCCGCTGTGAGCCGGTAGTGTTGCAGTTTACAAAatgtggggggaggggttgtaTACTGTTATCTGTGGCACTTGTTCAATGTGACTGGCGCCAGATGGCTGAAAAGAGGACCTACATGAAAGAGTCTTCTACTGGCTTTAAAGTAGAGCTTGACTTCTCAAACCATAATAACTGAAGCAGGGGTAAGTTGCATAACAAACACTTAAATATACTCAAAACTGCATTTGTAACTTTGCAAAGTAACTTGTACACGTGAGAAATTGGCCAAATAAAATTGCCTTACAAATGAGATAAGCCTACCCTGTTGGGTCCCAACCTTATTTCTTGCAGTTCTGCATTTGACTGACAACACTGCTAGCAATGTTACAAGACCATGAGTTGTTCTGTAATATCTTAATGTTTTGCTTAATTAGCGTTTGATTCTTCAGTTAATAGCTTTAATATAGACCTTATTTCTATAAttactaattatttt

Function

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008289 lipid binding molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02128 ATPeF0C, ATP5G, ATP9; F-type H+-transporting ATPase subunit c

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160675 lncRNA downstream 27425 12764912 ~ 12810017 (-) True G128155
TU160682 lncRNA downstream 106255 12725694 ~ 12731187 (-) False AMCG00001039
TU160683 lncRNA downstream 106255 12725694 ~ 12731187 (-) False AMCG00001039
TU160685 lncRNA downstream 106255 12725694 ~ 12731187 (-) True AMCG00001039
TU160632 lncRNA downstream 139774 12697177 ~ 12697668 (-) False AMCG00001041
TU160735 lncRNA upstream 158457 12999582 ~ 12999876 (-) True G128191
TU160764 lncRNA upstream 224015 13065140 ~ 13070429 (-) True G128212
TU160793 lncRNA upstream 365749 13206874 ~ 13211855 (-) True G128237
TU160800 lncRNA upstream 406764 13247889 ~ 13280730 (-) True G128242
TU160903 lncRNA upstream 755660 13596785 ~ 13597366 (-) True G128322
AMCG00001046 mRNA downstream 957 12814441 ~ 12836485 (-) True AMCG00001046
AMCG00001043 mRNA downstream 42394 12789335 ~ 12795048 (-) True AMCG00001043
AMCG00001044 mRNA downstream 60429 12765659 ~ 12777013 (-) True AMCG00001044
AMCG00001038 mRNA downstream 77075 12752413 ~ 12760367 (-) True AMCG00001038
AMCG00001042 mRNA downstream 97978 12732619 ~ 12739464 (-) True AMCG00001042
AMCG00001048 mRNA upstream 118817 12959942 ~ 12974186 (-) True AMCG00001048
AMCG00001051 mRNA upstream 145910 12987035 ~ 12989882 (-) True AMCG00001051
AMCG00001059 mRNA upstream 372664 13213789 ~ 13224364 (-) True AMCG00001059
AMCG00001060 mRNA upstream 447888 13289013 ~ 13302989 (-) True AMCG00001060
AMCG00001061 mRNA upstream 516367 13357492 ~ 13359724 (-) False AMCG00001061
TU160686 other downstream 85926 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 2137094 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 2559231 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 3418117 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 5191720 7629915 ~ 7645722 (-) True G127039
TU160833 other upstream 515858 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 1751574 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 2338116 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 2522942 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 2719220 15560345 ~ 15909126 (-) False AMCG00001127

Expression Profile