RNA id: AMCG00001054


Basic Information

Item Value
RNA id AMCG00001054
length 4185
RNA type mRNA
GC content 0.39
exon number 10
gene id AMCG00001054
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13076920 ~ 13095872 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCACATCCCGAAGCCTTCTGTGCCCTTAACCTTGTAGGCTGTGCtggaacattattttctttctgtatctCTTAACACAAGTGTACATTAAAAGTTGTTTTCATCTGTCGTCATGTCTCTTGCTGCAGAGGCGTTTGTATCCCAGATAGCAGCTGCAGAACCTTGGCCTGAAAATGCAACACTGTTTCAGCCTCTGAAGGATGACCAAATACTGCTCTCAGATCATGCCTCATCCCTTGCTGttcagGCATATCTGCGGATGTGCAATCTGCCCGTCCAGGTGGTCTGTCGATCCAATGCAGAGTACATGTCCCCATCTGGTAAAGTGCCCTTTATACACGTTGGTAATCAAGTTGTATCGGAACTTGGTCCGATAGTCCAGTTTACCAAGGCGAAGGGCCATTCACTTAGTGACGGACTGGATGAAGTCCAGAAGGCAGAGATGAAAGCCTACATGGAACTTGTGAATAATATGCTGCTGACAGCTGAGTTGTACATCCAGTGGTGTGATGAAAACACAGCTATGGAGattacTAGGCCGAGATTTAGCAGTCCTTACCCATGGCCCCTGAGTCATATCCTGGCTTATCAGAAACAGTGGGAAATCAGGCGCAAGATGAAAGCCATTGGCTGGGCAGGGAAAACCCTGGAACAGGTGTATGAAGATGTGAGTCAGTGCTGTCAAGCCCTGTCACAACGATTAGGGACACAGCCCTACTTCTTCAATAAACAaccaaCTGAACTGGATGCTCTGGTCTTTGGACATCTGTTCACCATCCTCACCACTCAGCTCACGAGCAATGAACTGGGGGAGAAGGTGAAGAACTATAGCAACCTGTTGTCCTTCTGCAGGAGAATAGAGCAAAACTACTTTGAAGATCACGACAAAGACAGTCTCGCCAGTTCAGGTTCTCGGTTCTCTAAAGGCCCGTCACTGATTTGAAGGGTAGTCCCGGAGCATTCCCTTTCTTCCCGTGTGTCTAATGGAAGGAATTTGTTTAAGAGAATTTAGTGTTAGAGGTAATTTTCCATTTACATGTTGTAACCTTTTGCACTGTCTATGGATACATTTTCTGGAATAACATTGAAATGGAAAGTGCCTAATTATAAAAATCTCATATTGAAGTCTCCCTTTTTTTGGATTATTTAatgcattgattattttatatctCCAGAGATGTAACTGAAAAGTGCCAGGCTGATCAAAATCCTGAGAAGAAAAAAgtcttgaaaataataatggtgtATGATGTAATCAATCCTAGTCACATTTGTGGTCAGCTTCATTTGTGGCCAGAGATTGGTTGGTTTTCTCTGCACATTCTTTTTAAAGGGTTTAACTCAAATTAGTGTGCACAGTGCTCTAAAGAGGGTTAAAGGTTCTCTCGCATAATggtgtgtttttcacttcttgGGAACTTAAAAGCTCTCTCAATCATTTGTATATgcataaaatgcattacagccTAATATCTAAAAATTGAACCCACTCGATGTTCCACAAAGCTGTCTCTGTACCAGAGGCCCTTCACACAAGGCATCTCACACACAGTCCTGCTTTAGAAGAACAAAAGAGCAACTGATTTGCATTTCACATTAGAGGATTATCATGTTAGCTGATATAGCCCCAAACTGGTAAAGCTGCTCCTTTCCCAAGTCTTGACAAGGGTTCACTCAAAGAGAAGCTTTGTGATTACAAGGTGATTAGCCCCTTTTACATTAGCATTCAAATGATGGTTGTCTTCTTAAAGTAAGCTGTGTTCAGGGTCACTGTTAACACTTGGGAGAGAAGGTGCCCGGCTTTCTGTCTGGTCAGGGCTCAgcggtttgtttttcttggatcATTTGTTGGTTGCTTCTGGATCTGGTCTCCACTTTGGTTCTCTCTAGCTTTTTCATTTAGGACACAATGAGTTTTGTTTAGTTCTTCCCCTTCAGGCAAGTTGCTGCACATGTAGTCTGACACCAATTGACCCACTGGCGTTTTCCAGGTCATCTTGCCAAAACATCACTACTCAAGTCACGTCAACACAATGCACATCTTTTAGAAACAAACTGCTCTCGGCACTTTGGACTCTTAAGACACTGCCCAATTATAGAAGAGCTATATTTTTCCACGAGCTGCGAAGGAATTAGCCAAGATTCCACCCCGCTTCAAAAACTTTGCAAAGGTCACTATCTGGTAGGGTGGTCACTCGTGACCTAGGTCAGTTAGAGTAAAGGATACTGTTGACCTCAGCATGGACTGATGCTATCCGTATCTCAACAGTGAGATAAAATTACCTAAGGGAACACCTCCTAATTTACAGAATAGGTTGTTGAAGAAGTTGTAGTTATCCAGTGATTAGGTCAAATAGATGCAATCagtaccaaataaaaaaaaaaaggtttaaatccATCTTATAAAGGCACAACTTTAGCCGAGTtccccagctgtgtgtgtgtgatcaatGACCATGACTTGGAGCATCTTTGTAATGTCCAAACCCAGACAGCTGCAAAGAATGACACCTCTGCAAATATATGTTGTTATCAATGGATTTGTTTCTCAACTTATTTTCCAGAAATTTACATTCATTATTCTGGCAATTGACTTCAAATAATGTCACCAGTGTGTATTCATCAATATATCTAGTGTTTTATTAGCCTTTAATCAGCAAAATCCAGTGACAATAATAATCGAATGGGTTGATCTGCTCTTTTATTTAAGACTTCATAATAGTAATCATGAAAATATCATGATCAATTTGAGtatgaatgagaaaaaaaaaaaagtgtcttcaTTCCCAGACAATCAATATTAACCATATAATATGTCCTGACCATCTCTATAGCATCCACTGTATGTACAAaatacaactctggaaaaaattatgagaccacaaatgtttcttaaatcagcatctctacatgtatggcagccattccattctattcttatttttatttggaatttgggagaaatgttgtcagtagtttatagaataaaacaaaaatgttcattttacccaaacacatacatataaatagtaaaaccagagaaactgataattttgcagtggtctcaattttttccagagctgtaagcattgatgtgtatttttcttaacaGTGTATTAAGCATTTACTAAACTGTTTTAGCAATATTCTGCTGGAAGGCCattctattttatttcctcCTAAACAAACGGCACTGGCACAACTGTCTTGAACATGCTTCACTTAATTTTGTTAAAGACCCTGTAGCTCTATTCTTCTGTACAATGGTCATACAAAAGGCTAAAAAGAGATGTGGGAAAAATAGCATGAATGTGTCCTGCAGAGATTATATTAGTGTGGGGAAATTATACCAAACTTGtgatgttttctttcattttattatttgaaaagcaATGACTACAGtaacatgcttttgtttgtggCTTTTGTTTCTCTAGGTCCCTCgtataaagacatttaaaactcACTGCAGCAAAGggtaataaaatgtacaaatggaATGTGCTAGTGGGATGTGCCTAATGAAGCCTCTTAGGATCAGTTGGGCAGACGGTGTGTGCTTCATTTCCTGCACtattccccccccccttatAAGCAGAGCATATCTCCCATGGCTCCCACAACAATTATCACCCACTTgttctgcagttttgttttttgtttttgtcttttttttaagggggggtgggttctctttttttttcattttgtgttacCCAGCCTGAGAAATCCACTGTATTAATCATTGCCAGGCTTGTTATTTATCACCTGCTGGgtgagaaataataattttggcACTAGTGGGGCAGTGGGCCAGAGGTACCGAATTaagtaaaacatctaaacacTAGCAAGGATCATTTCTCTGATTAATGATTCCTTACAAAGAAAAAGTGCCACTCATTATCTGGCTCTCTATGTCCGAAGTGGGATTTTCTGCTAAAGATTgctttaggttttctttttatgttctGTTGTCGATTGCTTGCACAATCCATAAAAGTACACCTTTATTTCCATTCCCCTGAGACTGTTGGTTGTGAGCATTTACAAGAATGGTTCCTCAAACTGTTCTGTACACTATTTCAACTGGCACAAGCTTTACATTTATTACAGATAATTTACAGATTGAGGAATATTATTACCCATTTATTAAACTGGCTTATATTTATATCAACGTgtg

Function

GO: NA

KEGG:

id description
K17776 MTX; metaxin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160703 lncRNA upstream 235912 12837651 ~ 12841008 (+) False G128171
TU160704 lncRNA upstream 235912 12837651 ~ 12841008 (+) True G128171
TU160610 lncRNA upstream 400746 12638985 ~ 12676174 (+) True G128107
TU160600 lncRNA upstream 421748 12606039 ~ 12655172 (+) True G128101
TU160823 lncRNA downstream 261619 13357491 ~ 13382644 (+) False G128255
TU160825 lncRNA downstream 261619 13357491 ~ 13359738 (+) True G128255
TU160870 lncRNA downstream 365794 13461666 ~ 13463482 (+) True G128294
TU161007 lncRNA downstream 988414 14084286 ~ 14084930 (+) True G128402
TU161297 lncRNA downstream 1677746 14773618 ~ 14776723 (+) True G128662
AMCG00001058 mRNA upstream 3630 13069967 ~ 13073290 (+) True AMCG00001058
AMCG00001056 mRNA upstream 13794 13043608 ~ 13063126 (+) True AMCG00001056
AMCG00001053 mRNA upstream 47473 13029043 ~ 13029447 (+) True AMCG00001053
AMCG00001049 mRNA upstream 53170 13009696 ~ 13023750 (+) True AMCG00001049
AMCG00001050 mRNA upstream 72885 13002935 ~ 13004035 (+) True AMCG00001050
AMCG00001057 mRNA downstream 105602 13201474 ~ 13211846 (+) True AMCG00001057
AMCG00001055 mRNA downstream 142351 13238223 ~ 13280730 (+) True AMCG00001055
AMCG00001062 mRNA downstream 267665 13363537 ~ 13371293 (+) True AMCG00001062
AMCG00001063 mRNA downstream 308943 13404815 ~ 13433100 (+) True AMCG00001063
AMCG00001067 mRNA downstream 418812 13514684 ~ 13519469 (+) True AMCG00001067
TU160309 other upstream 1065495 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 2922733 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 4456725 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 11380673 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 11476281 1599696 ~ 1600639 (+) False AMCG00000723
TU161370 other downstream 2074039 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 2313240 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 4927188 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 5450021 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 5459279 18555151 ~ 18558174 (+) False G129442

Expression Profile