RNA id: AMCG00001060


Basic Information

Item Value
RNA id AMCG00001060
length 954
RNA type mRNA
GC content 0.50
exon number 10
gene id AMCG00001060
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13289013 ~ 13302989 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCACGGCCGCCCTGCGCATGTTTATGGAGTTAGGAATGGTGCAAAAATTCAAAATCGATTATGAGACGCTGTGCAGGTGGCTGCTTACAGTGAGGAAGAACTATCGCATGGTCCTGTACCACAACTGGCGGCACGCTTTCAATGTCTGTCAGTGCATGTTCTCCATGTTAACAACAGCAGGATTTCAGGAAACCTTGACTGAGGTAGAAATTTTAGCTCTCATTGTGGGCTGTCTGTGTCACGATCTTGATCACCGTGGAACAAACAATGCTTTTCAAGCCAAAACGGGTTCAGCGCTGGCTCAGCTGTACGGTACTTCAGCAACTCTGGAGCATCACCATTTCAACCACGCCGTCATGATCCTTCAGAGTGAGGGCCACAATATCTTCTCAAACTTGTCCTCCAGAGAGTATAGTGACCTTATGCAACTTCTAAAGCAGTCAATATTGGCCACAGACTTAACCCTCTACTTTGAGAACAGAATGGCTTTTTTTGATCTGGTTGATAAAGGAGAGTACAACTGGAATGTCAAGAATCACAGAGACATGTTCAGGTCAATGCTGATGACGGCTTGTGATCTGGGGGCTGTGGCTGAACTTGTTACCAGCGAGTTCTTTGAacaaggagacagagagagatctGAACTGAAACTTACTCCTTCGgcCATTTTTGATCGGAACAGGAAAGATGAGCTGCCCGGGCTGCAGCTCGAGTGGATTGATGGGATCTGTTCGCCACTGTATGAGGCGCTGGTGAAGGTGAACCCCAAGCTGCAGCCCATGCTCGACCTCATCCAAGGGAACAGGGCCAAGTGGGAGGAGCTTCACCGGGAACGCCAGCGCACCCAAAGCGACGCCCCGGACAGCAGCAACAATACGAGTACGAGTGGTGGTCCGAGCAGTGACACAGGTATATCCTGCTGCAGCACACCCCCGGAGAACACCAGCTAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160800 lncRNA downstream 8283 13247889 ~ 13280730 (-) True G128242
TU160793 lncRNA downstream 77158 13206874 ~ 13211855 (-) True G128237
TU160764 lncRNA downstream 218584 13065140 ~ 13070429 (-) True G128212
TU160735 lncRNA downstream 289137 12999582 ~ 12999876 (-) True G128191
TU160675 lncRNA downstream 478996 12764912 ~ 12810017 (-) True G128155
TU160903 lncRNA upstream 293796 13596785 ~ 13597366 (-) True G128322
TU160917 lncRNA upstream 469832 13772821 ~ 13773878 (-) False AMCG00001068
TU160947 lncRNA upstream 476243 13779232 ~ 13779656 (-) True G128355
TU160951 lncRNA upstream 481044 13784033 ~ 13785913 (-) True G128358
TU160999 lncRNA upstream 703280 14006269 ~ 14008671 (-) True G128395
AMCG00001059 mRNA downstream 64649 13213789 ~ 13224364 (-) True AMCG00001059
AMCG00001051 mRNA downstream 299131 12987035 ~ 12989882 (-) True AMCG00001051
AMCG00001048 mRNA downstream 314827 12959942 ~ 12974186 (-) True AMCG00001048
AMCG00001045 mRNA downstream 447888 12837442 ~ 12841125 (-) True AMCG00001045
AMCG00001046 mRNA downstream 452528 12814441 ~ 12836485 (-) True AMCG00001046
AMCG00001061 mRNA upstream 54503 13357492 ~ 13359724 (-) False AMCG00001061
AMCG00001066 mRNA upstream 131547 13434536 ~ 13441759 (-) True AMCG00001066
AMCG00001065 mRNA upstream 139062 13442051 ~ 13470870 (-) True AMCG00001065
AMCG00001064 mRNA upstream 170389 13473378 ~ 13486109 (-) True AMCG00001064
AMCG00001069 mRNA upstream 215572 13518561 ~ 13693118 (-) True AMCG00001069
TU160686 other downstream 537497 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 2588665 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 3010802 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 3869688 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 5643291 7629915 ~ 7645722 (-) True G127039
TU160833 other upstream 53994 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 1289710 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 1876252 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 2061078 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 2257356 15560345 ~ 15909126 (-) False AMCG00001127

Expression Profile