RNA id: AMCG00001061


Basic Information

Item Value
RNA id AMCG00001061
length 893
RNA type mRNA
GC content 0.42
exon number 3
gene id AMCG00001061
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13356983 ~ 13359770 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCCTGTAAATAGTGTGACCTTCTTCCACCGGTTTGTGAGAGTTGTTCCCCGAGACAGACGGAAGCAGAGCGCTGTACAGCGGGAAGCGTTATTATTTGACTGTCCAGTAACTTATTATCAAGgaAAGAAAATGGGTGATGtggaaaagggaaagaaagtcTTTGTCCAGAAGTGTGCGCAGTGTCACACTGTCGAAAAGGGAGGCAAGCACAAGGTTGGACCGAACCTCCATGGTCTGATGGGGCGTAAAACTGGTCAGGCTGAAGGCTTTTCATACACTGAAGCCAACAAGAGCAAAGGTATTGTCTGGACTGAAGATACACTAATGGAATACTTGGAAAACCCTAAGAAGTATATCCCCGGGACTAAAATGATCTTCGCTGGGATCAAGAAGAAGCCAGAGCGGGCTGATCTTATTGCGTATCTGAAACAGGCCACGTCTGAGTAGAGGGAGGACCTAGGCTAAATCTAATATCAATGTACAGGCGGCTGTAATGTAATGGTTTTGTTAGTTCACTATTAAAGTTTTTTAATGTCTCGGGGCCCAGGTCTTGTCAATTTTGATGTATGATTTGGCATTTGCCTCATCTTTTCCAGAGCATCAAATCAATGTTGTATGCTAGCTTTTATTTATCACCAGAAGTATGTCCCAAACCACGGACTAAATATTTTTAAGTGTCAGGTGACAATAGCATTGTCCTCCCTCTGGAAATGGTACATTTATCTCCCGCTTTCACAGGCGCTAATGGAGAACAATTTTAAACTACCTGTGTTAAGGTAATCCAGGTGCATTTAGACTTTTAAAAGCGGCCGTACATCTTCTAAAACTATTGTTAGTTGTGTATATGGAGGGGATTTTGTTTCTCATCATTAAATTGATCTGAAAACTAa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0070469 respirasome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005506 iron ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160800 lncRNA downstream 76762 13247889 ~ 13280730 (-) True G128242
TU160793 lncRNA downstream 145637 13206874 ~ 13211855 (-) True G128237
TU160764 lncRNA downstream 287063 13065140 ~ 13070429 (-) True G128212
TU160735 lncRNA downstream 357616 12999582 ~ 12999876 (-) True G128191
TU160675 lncRNA downstream 547475 12764912 ~ 12810017 (-) True G128155
TU160903 lncRNA upstream 237061 13596785 ~ 13597366 (-) True G128322
TU160917 lncRNA upstream 413097 13772821 ~ 13773878 (-) False AMCG00001068
TU160947 lncRNA upstream 419508 13779232 ~ 13779656 (-) True G128355
TU160951 lncRNA upstream 424309 13784033 ~ 13785913 (-) True G128358
TU160999 lncRNA upstream 646545 14006269 ~ 14008671 (-) True G128395
AMCG00001060 mRNA downstream 54503 13289013 ~ 13302989 (-) True AMCG00001060
AMCG00001059 mRNA downstream 133128 13213789 ~ 13224364 (-) True AMCG00001059
AMCG00001051 mRNA downstream 367610 12987035 ~ 12989882 (-) True AMCG00001051
AMCG00001048 mRNA downstream 383306 12959942 ~ 12974186 (-) True AMCG00001048
AMCG00001045 mRNA downstream 516367 12837442 ~ 12841125 (-) True AMCG00001045
AMCG00001066 mRNA upstream 74812 13434536 ~ 13441759 (-) True AMCG00001066
AMCG00001065 mRNA upstream 82327 13442051 ~ 13470870 (-) True AMCG00001065
AMCG00001064 mRNA upstream 113654 13473378 ~ 13486109 (-) True AMCG00001064
AMCG00001069 mRNA upstream 158837 13518561 ~ 13693118 (-) True AMCG00001069
AMCG00001068 mRNA upstream 407817 13767541 ~ 13773826 (-) True AMCG00001068
TU160686 other downstream 605976 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 2657144 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 3079281 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 3938167 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 5711770 7629915 ~ 7645722 (-) True G127039
TU161258 other upstream 1232975 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 1819517 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 2004343 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 2200621 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 3813146 17172870 ~ 17173677 (-) False AMCG00001156

Expression Profile