RNA id: AMCG00001067


Basic Information

Item Value
RNA id AMCG00001067
length 1528
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00001067
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13514684 ~ 13519469 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCGGTTGTACCTCCTACTTCCGAGTCCTGTTCAAAGAAGAAGGAGTACAGCATCCCCGTCCTCTCCCCAGAGATGATGAATCTCATCATCCAGTATGCCTATACCGGCGCCGTATCCATGAACTCCGAGAATGTGCAGGAGCTGCTGGTAGCGGCTGACCAAGAACCACTTCAGCGGGTGGCTGAGCTCCAGCGGGTGGCCTACCGCTACACCCTGCAGCATTTCAAGCCCATGGTCAAGGCCTCCGCTGAGTCTCTGGCGCTCTCCCTGGACCAGCTGCTGGACATCATCACAAAGAAAGAACGTCAAGCAGGAGGACATGGTCTTCAAGGCCATCCTGTGCTATACTGCCCACGCACCCAGCGAGCAATGCAGCCACATCTCCGTTCTGGTACCCAAGGTCAGAGTCTGCGGAAGGACATAGTATGGATGGTTCTGATGCACCCACAGGACTTCATGAAGAAAGTGAGGAACAACGAGATGGTGAAGCAGACCGCCGAGTGCAAGCCTATCATCAACAATGCAGTCAAGGCAATGTACCACATGAATGGCTCAGACGCGGACTTCCACAACCCCATGTCCCGGCCACGGCTACCCTATGACATCATGCTGTCGATCGGGGTTCACTGTGTGAACGTCACCATCTGGGAGAAGAACCTGAGGGCCTACCATGGGGTTGCCGACCTCAAGGGCTGGGTGTACTGCATGGGTGGCTTCGACTGCATGGAAAACTTCAGCAGCATGTCGAAAATCGATCCTGTGGCCCGCACTTGGCACAAGGTGCGGCCCATGAGATACTGGCGTTGCAAGGTCAGCGTGGCTGTGAGGGACGGCTTCATATATGCCATGAGCAGCTTCGACAGCCACGAGCAGCTCAACACAGCCGATCCCTTCAATCCCGAGACCAACTGCTTGACCCAAATCGCGCCCATGCATGAGGAAAGAAGCAATGCCAGCTCCACCACCCTGCACAACAAGGTGGGAAGCCTCCCTGCAGCGCTCACTGTAAATGGGGCTAGGTCGAGTCTCAGTGTACACCTGCGGGGCACAGATGGGAACGAGTGTCACTTGACATCAGAAACATACAGCCCAGAGACCAACCAGTGGACCACCATCGTCCCCATGTTGAGCAAGCGCAGAGGAGTGGGCGTGATCGCCTATGAGGACCGCGTGTATACGCAGGTGGGTGGCTTTGATGGGACGAACCAGCTCGTAGAGGCCTGCAACACGCTGACCAACAGCTGGCGCCCAGTGCCCACCATATGCAGCCCACACAGCAACTTCGGCATTGAGGTGGTGGACGACCTCCTGTTCGTGGTGGGCGGAACCAACGCTTTTTCCGACTCCTCCAGCTTGGAGTACTACTACAGCAAGTGGTACAATGCCCACAACATGAGCATCTCCTGTACTGCACTCAGCTGCCAGGGCTGCCCAATGTGGCCAAGTACGCCACCCCCTGAGATGCCCTGCTGTCCGGCTTTCATTGAGAGGAAACCAAACCCCCCCACCAATAGCCTTCCCTCCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160870 lncRNA upstream 51202 13461666 ~ 13463482 (+) True G128294
TU160823 lncRNA upstream 132040 13357491 ~ 13382644 (+) False G128255
TU160825 lncRNA upstream 154946 13357491 ~ 13359738 (+) True G128255
TU160703 lncRNA upstream 673676 12837651 ~ 12841008 (+) False G128171
TU160704 lncRNA upstream 673676 12837651 ~ 12841008 (+) True G128171
TU161007 lncRNA downstream 564817 14084286 ~ 14084930 (+) True G128402
TU161297 lncRNA downstream 1254149 14773618 ~ 14776723 (+) True G128662
TU161300 lncRNA downstream 1257390 14776859 ~ 14779441 (+) True G128663
TU161347 lncRNA downstream 1551604 15071073 ~ 15073902 (+) True G128697
TU161406 lncRNA downstream 1690884 15210353 ~ 15211325 (+) True G128747
AMCG00001063 mRNA upstream 81584 13404815 ~ 13433100 (+) True AMCG00001063
AMCG00001062 mRNA upstream 143391 13363537 ~ 13371293 (+) True AMCG00001062
AMCG00001055 mRNA upstream 233954 13238223 ~ 13280730 (+) True AMCG00001055
AMCG00001057 mRNA upstream 302838 13201474 ~ 13211846 (+) True AMCG00001057
AMCG00001054 mRNA upstream 418812 13076920 ~ 13095872 (+) True AMCG00001054
AMCG00001070 mRNA downstream 255106 13774575 ~ 13785857 (+) True AMCG00001070
AMCG00001075 mRNA downstream 326930 13846399 ~ 13848862 (+) True AMCG00001075
AMCG00001074 mRNA downstream 405983 13925452 ~ 13935840 (+) True AMCG00001074
AMCG00001079 mRNA downstream 486838 14006307 ~ 14007332 (+) True AMCG00001079
AMCG00001078 mRNA downstream 496635 14016104 ~ 14055778 (+) True AMCG00001078
TU160309 other upstream 1503259 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 3360497 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 4894489 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 11818437 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 11914045 1599696 ~ 1600639 (+) False AMCG00000723
TU161370 other downstream 1650442 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 1889643 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 4503591 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 5026424 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 5035682 18555151 ~ 18558174 (+) False G129442

Expression Profile