RNA id: AMCG00001068


Basic Information

Item Value
RNA id AMCG00001068
length 2962
RNA type mRNA
GC content 0.40
exon number 10
gene id AMCG00001068
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13767541 ~ 13773878 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCACGCCCAGAACACCCCGGCGAGGTTGGAAAGCACACGATTTCCGCCATTATTTGAATTTGACCTGAAATTAGACACGTTTCCTTTAAGGGATTCAACTTGGTCTAAGCAAAGATCCTCTACCAGGATCTTTGATCTGGGTGTACAGTGTGCTGTATATGTTAACGATATCTTGTAATGGAACTGCAAGCAGAGCCGATGACGCTGGGATCTCCGACCTCCCCTAAGCCGGGCCCAGGGGCTCAGTTCCTGCCCGGGTTTCTGATGGGGGACCCGCCGGCGCCAGCCACTCCCCAACCGCGCACCTTCGGCGTCTCCAGTGTGGGTGGCTTGGAAATGAGGTCTCCTCTTATGGCAgGTGGATCTCCTCCTCAGCCAGTGGTCCCCACACACAAGGACAAGAGTGGTGCCCCGCCAGTTAGAAGTATATATGATGAATTTGCAAGTCCGGGGATAGGGGCATCCCCACTGAGTTCACGGAAGCAACCTTCACTTTCAATGATGCAGACTCCGCTGTCTGGATTTAATGCAGCCACCCCAGGAACAGGAACAAGTGTTTTTAGTCCTGCTACCATTGGACAACAGAGAAAGACGGCACTCTCTCCAGCCCAAGTGGATCCTTTCTATACACAGGGAGATGGTCTTTCTTCAGATGACCGTTTAGATGACACGTGGGTCACTGTGTTCGGGTTTCCTCCTGCGTCTGCCTCTTACATCCTTTTGCAGTTTGCCCAATATGGAAACGTCCTAAAACATGTGATGTCTAATAATGGAAATTGGATGCACATTCAATACCAATCTAAACTCCAAGCCAGAAAGGCACTGAGTAAAGATGGAAAAATCTTCGGAGAAGCAATCATGATTGGGGTAAAACCTTGCATAGAAAAGAATGTGATGGAGATCCCTGATAAAGGCTTGTCATCCAGCACTATGTTTACACCTCCAGTTAGAAACTTAGGGACACCAACCCAACCTGTGAACACACCGCGGTCCACATCTATGCGACCCCTCACTGCTGCCTATAAAGCATCTAGTAGTGATTACCAGGTTGTTTCTGACCGACAGACCCCAAGAAAAGATGAGAGTTTTGTTTCCAAAGCAATGGAATACATGTTTGGTTGGTAGGAATTAGACTTTCTTTTGGAAATTATGGAAGATGGTCTCAATTACCAACAGTAACCACCACCGGTTCACTCTCAGATATTGACACTACGACTTGGTTAGTTGTATAACCACTGCTGTCAAACTGTCCTATTCTGATGCAGACAATTTGTAAATACTTGGCACTTTATGTTAGGGTGTAATGTGCAGGGCTCTGTGGACTATGCACTGTGTACAACATGGGTAAGCAATGCATCATTTAGTCTGTAAATTAAGGTTCTGAGGCAAGAACACAAAATCAGAGATATAAACTTGATTGGCCACTTAAAACCATAGAGATTTAGAAAAGTTTTTGTGATAGGAATGATCTTTTAGAAATAGTTTTGAATTACCTTTTTGTAATCTTCTCAGAACAACTCGTAGAcccctttaaaaatatataaaaggcaGCTTCCAAGTCAAAAAGTTTGCGTAAAAAGATGCAGATTACATGCATTTGTGAAACATTTGATTAGTCTGTATGGTATGAGGTTATATTCAGCACATggttttaaagtgaaaacaatcaaaatcacTTTTGGAATAAGAGAAGTTGTAGGAAAAAAGAATGCAACTTTTAGAATTTGCATATGGATACTGCCTTTATATGTTGACTTGTTTTCCCCATAATGCTTTTGGGGCTGTGTGTTTTAAcattatcattttcttttcactacTCCCTATAAATTGCTCAttcttttcctgtctttttaaCACTGTCCTATCTCTAGATATATCAAAATACCTCTGTTGTCCAAGTtactgttttataaaatgtctAATAAATACTGCATCACTAGAAGACTAGTTTAAGGTTTTTCCTCCCGGTCAGTGTCCTAAACTCCTGGAGCAAAGCTGTCTGTCCCTCGAGATAAATCAGGAATAGGATTCAACTGTCAGGGGCAATTCAAACCAGAATAGCTGAGCAGCATTATTGATTGAGTTTCAGATCTTAAATGGACGCATCTAGGCACAACTAAGTCTGTAAAACAGTTCCCTTAAACTCAGCAGTTTATAAAATTCATGCAATTTATTATGCAGGCATTTCATTGTGTTGGCATGATGCCTTTTATGTAAATCAAGTTTGCAAGGTTGGTAGTGTATTCCACTTTTTAGCCAATATTGAAAGACACCTGGGTTGACATCCCTTTCCTTCCTCACAGTGGCAAGACCTGTAAATATAATGagcaataatgaaataaaataattgaaatacttGATACTTGATACTTGAAATACTTAATGAGCATGTATCAGCTTGATATTTTTCTCAACCCCTCCacctttttgtaattaaaaaatctcCAATTAAAAGTCCTTTTCATGCATTTATGGCtaagagaaatgtaaaatattttgcatatgtAAATGACCAGATGTTTCAGAGAACACTGTCATGGTTAAAGTGGtctttccattgtttttcaAGGGTTCTTGAAGATGGTTCATGAATGaagctgacattttttttattatgaattgtaCCTCTTTATGGCTAaggttgtctttttttgtttttgttttttaatatatctgtaGTGTAATATGTAAGCCTTAAGTAACCGGAAAGATAAATGGGTGAGAAGGACTGTGAAAGGAACAAATAAGATTGATTGGCATTGCCATTTTTTGCTTGTAATTGTTTCTTATTCAAAATAGTTGGCTGTAGTCTCTCACAACTGTCCTGTTTTGTTTGGGGGAAATTATGAATGAGGATATATCACATAAACGGAACAAAATCTGTATTTGACTAAATGTGAAAACTGGAACGGTTAATACTGCCACCTGCTGTGAGGATGGTGCCTTTCCCTTGAAATGTG

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0051028 mRNA transport biological_process
GO:0005643 nuclear pore cellular_component
GO:0031965 nuclear membrane cellular_component

KEGG:

id description
K14313 NUP35, NUP53; nuclear pore complex protein Nup53

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160903 lncRNA downstream 170175 13596785 ~ 13597366 (-) True G128322
TU160800 lncRNA downstream 486811 13247889 ~ 13280730 (-) True G128242
TU160793 lncRNA downstream 555686 13206874 ~ 13211855 (-) True G128237
TU160764 lncRNA downstream 697112 13065140 ~ 13070429 (-) True G128212
TU160735 lncRNA downstream 767665 12999582 ~ 12999876 (-) True G128191
TU160947 lncRNA upstream 5406 13779232 ~ 13779656 (-) True G128355
TU160951 lncRNA upstream 10207 13784033 ~ 13785913 (-) True G128358
TU160999 lncRNA upstream 232443 14006269 ~ 14008671 (-) True G128395
TU161238 lncRNA upstream 810463 14584289 ~ 14585054 (-) True G128614
TU161249 lncRNA upstream 815199 14589025 ~ 14602330 (-) False G128624
AMCG00001069 mRNA downstream 74423 13518561 ~ 13693118 (-) True AMCG00001069
AMCG00001064 mRNA downstream 281432 13473378 ~ 13486109 (-) True AMCG00001064
AMCG00001065 mRNA downstream 296671 13442051 ~ 13470870 (-) True AMCG00001065
AMCG00001066 mRNA downstream 325782 13434536 ~ 13441759 (-) True AMCG00001066
AMCG00001061 mRNA downstream 407817 13357492 ~ 13359724 (-) False AMCG00001061
AMCG00001071 mRNA upstream 23778 13797604 ~ 13802479 (-) True AMCG00001071
AMCG00001072 mRNA upstream 32387 13806213 ~ 13820006 (-) True AMCG00001072
AMCG00001073 mRNA upstream 46193 13820019 ~ 13844401 (-) True AMCG00001073
AMCG00001077 mRNA upstream 165885 13939711 ~ 13960043 (-) True AMCG00001077
AMCG00001076 mRNA upstream 189377 13963203 ~ 13981932 (-) True AMCG00001076
TU160833 other downstream 407771 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 1016025 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 3067193 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 3489330 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 4348216 9418996 ~ 9419325 (-) True G127292
TU161258 other upstream 818873 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 1405415 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 1590241 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 1786519 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 3399044 17172870 ~ 17173677 (-) False AMCG00001156

Expression Profile