RNA id: TU160917


Basic Information

Item Value
RNA id TU160917
length 366
lncRNA type sense_over
GC content 0.55
exon number 2
gene id AMCG00001068
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13767541 ~ 13773878 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCCTCAAAAACCCTGCGGAGCGCCAGCCCCTGTCCGCCGCACAAAGATGACGTCACGCCCAGAACACCCCGGCGAGGTTGGAAAGCACACGATTTCCGCCATTATTTGAATTTGACCTGAAATTAGACACGTTTCCTTTAAGGGATTCAACTTGGTCTAAGCAAAGATCCTCTACCAGGATCTTTGATCTGGGTGTACAGTGTGCTGTATATGTTAACGATATCTTGTAATGGAACTGCAAGCAGAGCCGATGACGCTGGGATCTCCGACCTCCCCTAAGCCGGGCCCAGGGGCTCAGTTCCTGCCCGGGTTTCTGATGGGGGACCCGCCGGCGCCAGCCACTCCCCAACCGCGCACCTTCGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160903 lncRNA downstream 175455 13596785 ~ 13597366 (-) True G128322
TU160800 lncRNA downstream 492091 13247889 ~ 13280730 (-) True G128242
TU160793 lncRNA downstream 560966 13206874 ~ 13211855 (-) True G128237
TU160764 lncRNA downstream 702392 13065140 ~ 13070429 (-) True G128212
TU160735 lncRNA downstream 772945 12999582 ~ 12999876 (-) True G128191
TU160947 lncRNA upstream 5354 13779232 ~ 13779656 (-) True G128355
TU160951 lncRNA upstream 10155 13784033 ~ 13785913 (-) True G128358
TU160999 lncRNA upstream 232391 14006269 ~ 14008671 (-) True G128395
TU161238 lncRNA upstream 810411 14584289 ~ 14585054 (-) True G128614
TU161249 lncRNA upstream 815147 14589025 ~ 14602330 (-) False G128624
AMCG00001069 mRNA downstream 79703 13518561 ~ 13693118 (-) True AMCG00001069
AMCG00001064 mRNA downstream 286712 13473378 ~ 13486109 (-) True AMCG00001064
AMCG00001065 mRNA downstream 301951 13442051 ~ 13470870 (-) True AMCG00001065
AMCG00001066 mRNA downstream 331062 13434536 ~ 13441759 (-) True AMCG00001066
AMCG00001061 mRNA downstream 413097 13357492 ~ 13359724 (-) False AMCG00001061
AMCG00001071 mRNA upstream 23726 13797604 ~ 13802479 (-) True AMCG00001071
AMCG00001072 mRNA upstream 32335 13806213 ~ 13820006 (-) True AMCG00001072
AMCG00001073 mRNA upstream 46141 13820019 ~ 13844401 (-) True AMCG00001073
AMCG00001077 mRNA upstream 165833 13939711 ~ 13960043 (-) True AMCG00001077
AMCG00001076 mRNA upstream 189325 13963203 ~ 13981932 (-) True AMCG00001076
TU160833 other downstream 413051 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 1021305 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 3072473 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 3494610 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 4353496 9418996 ~ 9419325 (-) True G127292
TU161258 other upstream 818821 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 1405363 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 1590189 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 1786467 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 3398992 17172870 ~ 17173677 (-) False AMCG00001156

Expression Profile