RNA id: AMCG00001070


Basic Information

Item Value
RNA id AMCG00001070
length 4097
RNA type mRNA
GC content 0.42
exon number 23
gene id AMCG00001070
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13774575 ~ 13785857 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCATACAACGTCCTGACGTCATCAGCGTGGTACGGCGCAGAGTTGTTCTCAGGCAATGAAAACACGCATACCGGCACTGAGAGCAGGATCCTTATCCGGATAGGTGAGGACAAGGTAATCATTGTCGCATTTAAGCAGCTGATCGCTTGTTAGTGTTAAGCTCATCTTTACTTTCCACGTTTTGAGAAAGTATCCCTTACTAAGACTGCAACAgctagatgttttatttattgttgctgttaatCGAGAACAGGAATTGACTAATTTATGTCAGTTGCTGGGATATAACGGAAGATGAggattatgcattttgtttgaaaataaaacacactatCTTGGATACAGAATAAGTGGGGACCACAGTATAATGGAGTCACTAACTCAAAAAGAACAATCCTTTTGTGTTTACAAGAGGAAACTGAGCAGAACatttttgtactgttttattataatatgtCTGGCATCACTCATTTCCTCTGATGAAGATTATTATAAGTTACTTGGAGTCTCCAGAGAATCAACTACTAGAGAAATTCGACAGGCCTTTAAAAAGCTGGCTCTGACGATGCACCCAGATAAAAATCCTAATGACCAAGAGGCTCACGACAAGTTCCTGAAGATAAACAGAGCTTATGAAGTTTTAAAAGATGAAGACCTGAGGAAGAAATATGACAAATATGGCGAGAAAGGATTGCAGGATAATCAGGAGGGTGGGAGATATGAAAGCTGGAATTATTACCGATATGATTTTGGTATTTACGACGATGACCTTGAGATCATCACCCTAGACAGAGGAGACTTTGATGCTGCCGTGAATTCTGGGGAGCTGTGGTTTGTGAATTTCTACTTTCCACGCTGCTCCCACTGTCACGATCTGGCACCGACGTGGAGAGAATTTGCGAAGGAAATGGATGGGATTATCAGAATTGGGGCTGTGAACTGCGGTGACAACCGAATGCTGTGTCGAAGTAAAGGCATCAACAGTTACCCAAGCCTGCACATGTTCAGAGCTGGAATGAATCCAGAAAAGTTCTATGGAGACCGAACAATGAAAAGTCTACAAAACTTTGCTATGAAGTTTGTGAAAAGCAAAGTCACAGAGCTCTGGTCGGGCAATTTCTTGACTTCTATTGAAACCGCATTTGCGTCGAGAACTGGGTGGCTGATAACATTTTGTGCTGAAACAGGAGACTGCCTGGCTTCTGAAACACGACATAAATTAGCTGGGATGTTGGATGGTCTGGTTAATGTTGGCTGGATGGACTGCTCTACGCAAGCCCAGTTATGTGAGAGTTTCGATGTGACGTCAAGTGTAACGGCTTACTTCCCACCTGGAAGTTCCCTGAAGGAAAAAGGGGGTGTGCTGTTTCTCAGTAGCCTGGATGCCAGGGAGATTTACTCTGAAGTTATGCAACATTTACCAGATCTAGAGATGCTTACTAAAGACACTTTCAAGGATAAACTGGCCCATCATCGCTGGCTTGTATGCTTTACTTTTGGAGGGAAAGACTTGGGTTCACATGAGTACAAGAAACTGAAAACGCTTCTTAAAGCTGACCACATACAAGTGGGAAAGGTTGACTGCCATTCAGAATCGGACTTGTGTAATTCATTCTATATCCATAAGCCAAGCATCGCTGTCTTCAAGGGCTTTGGCATCAATGATTTTGAGATCCACCATGGAAAGGATGTTTTGTACAACATTGTTGCCTTTGCAAAAGATAGTGTTCAGGCTCATGTCACTACCTTGAGGCCAGAGAACTTCCCGAATCAGGAGAAGGAGCCCTGGCTTGTGGACTTCTTTGCACCATGGTGCCCCCCTTGTCGTGCTCTGCTGCCAGAGTTAAGGAAAGCATCGAAACAGTTGTTCGGACAACTGAAATTTGGGACTCTTGACTGCACAGTTCACGAAGGGCTCTGCAGTACGTACAACATCCAAGCCTATCCGACAACGGTCATATTCAATCAGTCGAATATTCACGAGTACGAAGGACACCACTCTGCTGATGGGATTTTGGAGTTTATTCAGGACCTTGTCAGGCCCTCGGTGGTCATCCTGACTCCAGAAACCTTCGATGAGCTAGTGAAAAGAAGGAGGCGCAACGAGACCTGGATGGTGGATTTTTACGCACCGTGGTGTGGGCCCTGTCAGGCCCTGATGCCAGAGTGGAAAAGAATGGCCAGGGTGGTCAATGGCATGATCAACGTGGGAACCGTCGACTGTCAGAAGTATCACTCCTTTTGCCACGAAGAAAATGTCCGTGCCTATCCTGAAATCCGGCTCTTTCCTCAAAACTCAAATCGGAGGGATCAGTACCAAACTTACAATGGCTGGAACAGAGATGCTCATTCCCTCAAAGTATGGGCGTTGGGATCTCTCCCTAGAGCCACGGTTGATTTAAACCCCGATGATTTCACCCACAAAGTTCTGAATGGGAAGGATCATTGGTTGATTGATTTCTACGCCCCATGGTGCGGTCCTTGTCAGCACTTTGCACCCGAGTTCGAGATGCTTGCCAGAACTCTGAAAGGAACTGTTAGGGCAGGGAAAGTGGATTGTCAAGCACATGGTCAGATGTGCCAGAGCGCAGGAATCCGGGCCTATCCAACAGTCCGGTTCTACCCGTTTCTAGGGACGAAAAAGAGAAGCGTAGAGggagaatatataaatagtcATGATATAAAGGCCATAGGTGACCTTCTGAGCCAGCGATTAAAGCAGATACAAAGCAGGCCCTCTTCTACGATCAAGGATGAACTTTAATTTTGACTACAACAACCCGAAGACAAATTGGAAGCAAAATTAAAGAAGAAAGAACTCCAGCTGTTGAAAAGAGACTCTTGGACAGAGATGTGGTGGCACTGTTTACTGTCATTACGCTTGGCGAGGGATGGGAAAAGGTTCACACTGTCCTACACCTGGCTCATAAAGTaactcctttctttctttttaatactcCGTCATTGTCCGAAAAAATAACCATAATTAGGCATGAAATAAATGTGGGTTAAGCAGACTTCACTGCCGGAtctgtatactgtatgtattaaatGGCCTTTTAAAGTAACTCCGGGTGTATCTATAAGCAACTCCGCGTGACACTACCAAGGACAACAGCGTTAACTGAACAGAAATGAATGGGAAGATTGTATTTGTGAGGCATGTCAGCAAATCTGACGTGCCATTGTattgccttttcatttttgGACCTGTGATAAATACTACTGCAGTATATTTTGTTAGATCGTTTAGGAGAAGCGCACATTACATTGTTAAATGTATGGCAGtgtccttttttatgttttatttactttccttTGCAAGGTCAAAACCGTTTTagatttctgtttatttatttagtttttatattattgactCTTCAAACATACTGTCTGTAATCAATTTCATTGCTTCGTGTGAACACTGAAACATTTTTGACCATTACGTTTCATTACAAACATTAGtgcaaaatgttgtgttttctcTACATACCTTAAGTTTGCTTCATCGGTTGTTGTACAGAGAGAACTGTTACGGAAAAAACTGTTAGGAGATCCTTATGTTCACGTGATTAAATAGAAAACCAGATTACACGCTACAGTGAAGACCAGTGTTTAAAACTgagtgaaatgtattaataagtATTGGAATAATATACTGAAGTGTACACAAATAAGTTTTATATGTAAGGTCATGTAAAACTTCTAAatcaagtgtttattttttgttctcttgACAGTTTAATTGACAGTCTATAAAATTGAAATATCCATCTCTGATTCAAGTAACAGTTTAACTGAAGAGTTTACAGTGTAGTTATGAATTCATTAATACGTCTCCACATGACATAGCTTAACCTTTTCTCTAAAGGCGATTGTGCAACTCCCTGCCAATTTGTATTGGGTGGGTCGAACAAAGAAAAgtagttttgctttgtttttccaggaACCAAAAGAATAAATTATTCGTCCTTTGGGTTATAGCTTTGCACAAATAGAGTActtttgcatttctgtgttttcaagCAAATGTCCAAAGATGTTTAATATACTCCCCTCGTCATGTTTTCACTGTCATCTGTAATAAAGTCACCGG

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K09530 DNAJC10; DnaJ homolog subfamily C member 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160870 lncRNA upstream 311093 13461666 ~ 13463482 (+) True G128294
TU160823 lncRNA upstream 391931 13357491 ~ 13382644 (+) False G128255
TU160825 lncRNA upstream 414837 13357491 ~ 13359738 (+) True G128255
TU160703 lncRNA upstream 933567 12837651 ~ 12841008 (+) False G128171
TU161007 lncRNA downstream 298429 14084286 ~ 14084930 (+) True G128402
TU161297 lncRNA downstream 987761 14773618 ~ 14776723 (+) True G128662
TU161300 lncRNA downstream 991002 14776859 ~ 14779441 (+) True G128663
TU161347 lncRNA downstream 1285216 15071073 ~ 15073902 (+) True G128697
TU161406 lncRNA downstream 1424496 15210353 ~ 15211325 (+) True G128747
AMCG00001067 mRNA upstream 255106 13514684 ~ 13519469 (+) True AMCG00001067
AMCG00001063 mRNA upstream 341475 13404815 ~ 13433100 (+) True AMCG00001063
AMCG00001062 mRNA upstream 403282 13363537 ~ 13371293 (+) True AMCG00001062
AMCG00001055 mRNA upstream 493845 13238223 ~ 13280730 (+) True AMCG00001055
AMCG00001057 mRNA upstream 562729 13201474 ~ 13211846 (+) True AMCG00001057
AMCG00001075 mRNA downstream 60542 13846399 ~ 13848862 (+) True AMCG00001075
AMCG00001074 mRNA downstream 139595 13925452 ~ 13935840 (+) True AMCG00001074
AMCG00001079 mRNA downstream 220450 14006307 ~ 14007332 (+) True AMCG00001079
AMCG00001078 mRNA downstream 230247 14016104 ~ 14055778 (+) True AMCG00001078
AMCG00001082 mRNA downstream 439873 14225730 ~ 14264053 (+) True AMCG00001082
TU160309 other upstream 1763150 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 3620388 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 5154380 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 12078328 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 12173936 1599696 ~ 1600639 (+) False AMCG00000723
TU161370 other downstream 1384054 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 1623255 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 4237203 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 4760036 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 4769294 18555151 ~ 18558174 (+) False G129442

Expression Profile