Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00001079 |
| length | 1026 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 1 |
| gene id | AMCG00001079 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030137.1 |
| NCBI id | CM030137.1 |
| chromosome length | 27060302 |
| location | 14006307 ~ 14007332 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0048923 | posterior lateral line neuromast hair cell differentiation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| K08033 | NEUROD1; neurogenic differentiation factor 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU160870 | lncRNA | upstream | 542825 | 13461666 ~ 13463482 (+) | True | G128294 |
| TU160823 | lncRNA | upstream | 623663 | 13357491 ~ 13382644 (+) | False | G128255 |
| TU160825 | lncRNA | upstream | 646569 | 13357491 ~ 13359738 (+) | True | G128255 |
| TU160703 | lncRNA | upstream | 1165299 | 12837651 ~ 12841008 (+) | False | G128171 |
| TU161007 | lncRNA | downstream | 76954 | 14084286 ~ 14084930 (+) | True | G128402 |
| TU161297 | lncRNA | downstream | 766286 | 14773618 ~ 14776723 (+) | True | G128662 |
| TU161300 | lncRNA | downstream | 769527 | 14776859 ~ 14779441 (+) | True | G128663 |
| TU161347 | lncRNA | downstream | 1063741 | 15071073 ~ 15073902 (+) | True | G128697 |
| TU161406 | lncRNA | downstream | 1203021 | 15210353 ~ 15211325 (+) | True | G128747 |
| AMCG00001074 | mRNA | upstream | 70467 | 13925452 ~ 13935840 (+) | True | AMCG00001074 |
| AMCG00001075 | mRNA | upstream | 157445 | 13846399 ~ 13848862 (+) | True | AMCG00001075 |
| AMCG00001070 | mRNA | upstream | 220450 | 13774575 ~ 13785857 (+) | True | AMCG00001070 |
| AMCG00001067 | mRNA | upstream | 486838 | 13514684 ~ 13519469 (+) | True | AMCG00001067 |
| AMCG00001063 | mRNA | upstream | 573207 | 13404815 ~ 13433100 (+) | True | AMCG00001063 |
| AMCG00001078 | mRNA | downstream | 8772 | 14016104 ~ 14055778 (+) | True | AMCG00001078 |
| AMCG00001082 | mRNA | downstream | 218398 | 14225730 ~ 14264053 (+) | True | AMCG00001082 |
| AMCG00001085 | mRNA | downstream | 320968 | 14328300 ~ 14333025 (+) | True | AMCG00001085 |
| AMCG00001083 | mRNA | downstream | 336416 | 14343748 ~ 14351478 (+) | True | AMCG00001083 |
| AMCG00001084 | mRNA | downstream | 365095 | 14372427 ~ 14399759 (+) | True | AMCG00001084 |
| TU160309 | other | upstream | 1994882 | 11999664 ~ 12011425 (+) | True | AMCG00001002 |
| TU159756 | other | upstream | 3852120 | 10147857 ~ 10154187 (+) | False | AMCG00000949 |
| TU159397 | other | upstream | 5386112 | 8617199 ~ 8620195 (+) | True | G127134 |
| TU157662 | other | upstream | 12310060 | 1668845 ~ 1696247 (+) | True | AMCG00000729 |
| TU157655 | other | upstream | 12405668 | 1599696 ~ 1600639 (+) | False | AMCG00000723 |
| TU161370 | other | downstream | 1162579 | 15169911 ~ 15174147 (+) | True | AMCG00001098 |
| TU161504 | other | downstream | 1401780 | 15409112 ~ 15420880 (+) | False | G128823 |
| TU162207 | other | downstream | 4015728 | 18023060 ~ 18044251 (+) | True | G129365 |
| TU162326 | other | downstream | 4538561 | 18545893 ~ 18547915 (+) | True | G129453 |
| TU162312 | other | downstream | 4547819 | 18555151 ~ 18558174 (+) | False | G129442 |
