RNA id: AMCG00001084


Basic Information

Item Value
RNA id AMCG00001084
length 4409
RNA type mRNA
GC content 0.41
exon number 16
gene id AMCG00001084
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14372427 ~ 14399759 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gTCTCAGATTTGgAGGCAAAGACCGACGGAGCGGCCTGATCCTGACAATTCCCCTCTGTTCAGAGCAGACCAGTATGGATGAGCTCAGCTCCACGCTAGACTATTTACTCAGCATACCAAGTGACAAGTGCAAAGCTAGAGGATTTACTGTGATCGTCGATGGAAGAAAATCTCAGTGGAATATAGTCAAGACAGTGGTGTTAATGTTGCAGGTTATTCTAGTGTCTGCCAATAAGCTGACTCGGTACATTGAGCCGTGCCAGCTGACAGACGAGTTTGGAGGCAGCCTTGTGTACGACCACATGGACTGGTTGAACAAAAGATTGGTCTTTGAAAAATTTACCAAAGAGTCCACGTCTCTGCTGGATGAGCTTGCTGTAATCAATGGGAATGAGAGAGGAAACCAACAGGACAAAGACAGACCCCCAGATTTTAATTTTCTACCGTCATTTGACCCTGAAACTGTTCTACAGACGGGCCATGAGCTCCTCTCGGAGTTGCAGCAGCGCCGGTTCAATGGCTCGGAAGGGGGTGTGTCCTGGTCCCCCATGGATGACGAGCTGCTGGCTCAGCCACAGGTGATGAAGCTCCTGGACTCCCTgagagagcagtacacgaaATACCAGGAGGTTTGCAGACAGCGGAGTAAACGTACCCAGCTGGAAGAGATTCAGCAGAAGGTCATGCAGGTTGTAAATTGGCTGGAGGGCCCTGGCACAGAACAACTGAGAACTCAGTGGGGTATTGGAGACTCCATTAGAGCCTCCCAGGCCTTACAGCAGAAACACGAGGAGATCGAGAGTCAGCACAGTGAATGGTTTGCGGTGTATGTGGAACTGAACCAGCAGATCGGCGCCCTGCTGAACGCAGGCGATGAGGAGGACCTGGTGGAGCTGAAggccctgcagcagcagctgagTGACGTGTGCTACCGGCAGGCCAGCCAGCTGGAGTTCAGGCAGAACGTCCTGCAGTCCGCACACGAGTTTCATGGCATCGCCCAAGACttgTCTCAACAGTTAGATGGTTTGCTTGGGATGCTTTGTGCAGATGTGGCCCCCGCTGACGGAGCTGCAATTCAGCAGACTTTAAAACACCTGGAAGAGAAGCTGAAGAGCGTTGATGGTGCTCTACAAGGTTTGAGGGAAAAAGGTCAGGTTCTTCTTGAACAAATTTCTAACCAAACATCTTGGTCATATGGGAAGGATGTCActattgaaaacaaagaaaatattgacCATATCCAAAGTGTCATGGAGGATATGCAGCTCCGGAAACAAAGGTGTGAAGATATGGTAGATGTGAGAAGATTAAAAATGCTTCAGATGGTACAACTGTTTAAGTGTGAGGAAGATGCTGCCCAGGCAGTCGAATGGCTTGGTGAGCTCTTGGACGCTCTCTTGAAGACCCATATCAGACTAGGAGATGATGCCCAAGAATCCAAAATTCTactggaaaaacacagaaagttTGTGGATGTTGCACAGAGCACTTATGACTATGGCCGACAGTTGCTCCAGGCCACCGTAGTTCTGTGCCAGTCCCTAAGGTGTACCACCAGGTCTTCAGGAGACACGCTGCCCCGGCTGAACCGAGTGTGGAAACAGTTCACCGTCACCTCTGAAGAAAGGGTACACCGGCTGGAAATGGCCAGTGCCTTTCACACAGCTGCTGAAAAGATTCTGAAAGAATGCCCGGAACACTCTGAAGTCTCCATTGACTTAGAAACGTATGAAGAAGTGGAAGCAGTTGGGAAATCTCTTCTGGACAGATTAACAGTGCCTGTTGTTTTCCCAGATGGAAGTGAGCAGTTCTTTGGGAGCCCCAGTGACATGGCTTCGTCTGCAGAACACATCCGAGACAAGATGAAGGTTGTCGAAGTGAAGAAGCTCGAGCAGCAGGAGgtggagcagcagcaggaagagCCAGAAACTGTTTCACAGGACAGCTAATGGCCCCTCTTGTGTCGCCCGATAAGGAGCCTCGATCCGCAAGCCAGCATGGCATCTGACCGTCACACGTTCCCACAACTACTCCGGCACACGACGCATTCCTTGCCGAGGGAGAAAACCCCTCATTCCATGTGTGTTACTGCACTCCGTTCATCTTAATACGCCGCGCCAAGCCATATTAATTTACCATGTGCTGTTTAAAGATACTAAGCTCCTCCTCCAGTTATATAttgtaaaagaaatacaaatacaactatAAACATTGCACTGAACTTCCCTCAGAGCTTTACCTGGCCTGTCTCCTGTCCGCCGCTGACAGTCGACTCAAGCTTTCAATGGTGCTACTAAAAATATAGAATGTCCAAGCACCACTCCTGTCCTCGTTATTACCTGGTGCTGTAGAACTTTTAGGCCTTAGGCAAACTTCCTGTTTGTAGACcgtaagaaatgtattttccttttgtttttgttttttttcttttcttaatttgtaaTACCTTAAATTGTTGCTGCATATTTTTTATCGTGCCAATACGCAACCTATCCTGAAGGCCTTTGATACTGGCATAAACTGCCTAACCTGCTGTTTTTAAGTATGTATTGACTGTATATTAAGCAGATATTGGCAAAATAAAccagctttttaaaattttttCCTGGATTGCTGTGATACTCATGTACTTCGAGGTACGGTATAGAGACAAAGCTTTGTTATAATACTTAATTATAATTCTAAGTGTAAAagctttgtttaaatgaataaaactgtaaatgggaattattttccttttcatagtTGTGATTATATGGTGTACGCTTCTCGCATCTTGAAGCatgctattaaatatttattttatattttattttttacatgtttgcTCATATTTTGGTCAGTTTTAAAGTCTGTGATGCCTTTGGAGTTCTCCATCTGGTTTGCACAAGATCGATTATACATTTGGTTATAATCTGGGttattagaaaaaaacatttaaacaaccaaataaaaagCATGCTTTTCTGCTTCAGTTTGATTTCTTAGTGATTATAGTAGATATAGttgacaaatattaaaattaaaagtactgataaacaaacatattaagGATTCCTACTTGAAATTAAGTGTACATTTATACTAATTAGTGAGTGATTGtgatttgctttattaaaagaaataataataatattgtgctGCTGCATTGTAGAGTTGCATTGGAAATTCACCATTTCTACAATTGAGCTTCACTCCCTGTTCATAATAAACCTGATTGGATATGGGTAAGAGAGGGCTAATAAACCACAGTGTTTGGTCACATGGTGTCACTGGTGTACCGTTTGTGTGTTGACTTATGTTCCCGTTATTGGAGTGAAAAGCCCAAATTTGGAAATGCTGGATTTCTGGCTTGTTTGATAccatggtattttttttttttttttaaataaattttgGTAGTTGGAAAGGCAATGTGTGATGCATGGTAAATACATGGGATATTGCTCTCAAACGTGTTAATTAAAACCGACTGCGACTTTTAAACTGTTGAGAACTATAACCCATGTAGGAATTTTGTAATGACTTTTGTTGAAGTTGATTACCTTAATGGAAGATGTTTTCCTCTGAATGTGAAGTAGGCTCCAAAAAGTGTTAGGCCAACATGAACTGTGGAGTTTTACTGATGAATTGTATTGTGGAATGTTATGAGTAACTTGCCTTAAGTCTGCATGTTAAACTAAGGTTTTATAGGAAAgaagatgaaagaaaaagatgaaTGCTGATCAATTTAATGAAGTATTTCATCGGTGAAATTGGAAGATGAAGGGTTTATACATGAATGTTTCATGCTGTGCCCTGATCCATTGTTGCTGctgttacatttttcttttgtaaaatagTCTTACTGACTaagaatttaatttacaaacgATCCTAATATATTTGGAGCCTGCTATAAATGCACTGTGTTATGTCTGTTTCAGcatcagaaaacaaattcaTTAAGTGACTTTCAAATACAACtgtaaattgtttaaaagtCTATAAGTGATTAATAACACAACCGGTCGAATGAGTACAAACACTGATACAGAAACCTGACATTTGTTGCATACACTGTAAATCTTATGATTAACTTATGAAATTGTATGGGTAACAGTATTTGCTGGTGTAATATGTGCTGAAGGACATAAAAAGCTCATATTTCCCTCCTCAACCAGCTTGAACCTACTTTCTCAGTGCTTAACAAATCTGAAGACATCTGGACAGGAAATCACAGAGGCTTGTATCATTCAATAGTTTCTTACTTTAATTATGTTGCCTTTAAGGATTATTTTAGGAAATCCCAACAAGAGATCACTATGTTTTATAGATACTTGATTGTGATTCATGTATGCCTAATTTCAATAATGAAAActagattattattatcttgaTTAATAAATGAAACCTGCTACATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161007 lncRNA upstream 287497 14084286 ~ 14084930 (+) True G128402
TU160870 lncRNA upstream 908945 13461666 ~ 13463482 (+) True G128294
TU160823 lncRNA upstream 989783 13357491 ~ 13382644 (+) False G128255
TU160825 lncRNA upstream 1012689 13357491 ~ 13359738 (+) True G128255
TU160704 lncRNA upstream 1531419 12837651 ~ 12841008 (+) True G128171
TU161297 lncRNA downstream 373859 14773618 ~ 14776723 (+) True G128662
TU161300 lncRNA downstream 377100 14776859 ~ 14779441 (+) True G128663
TU161347 lncRNA downstream 671314 15071073 ~ 15073902 (+) True G128697
TU161406 lncRNA downstream 810594 15210353 ~ 15211325 (+) True G128747
TU161435 lncRNA downstream 926235 15325994 ~ 15326220 (+) True G128772
AMCG00001083 mRNA upstream 20949 14343748 ~ 14351478 (+) True AMCG00001083
AMCG00001085 mRNA upstream 39402 14328300 ~ 14333025 (+) True AMCG00001085
AMCG00001082 mRNA upstream 108374 14225730 ~ 14264053 (+) True AMCG00001082
AMCG00001078 mRNA upstream 316649 14016104 ~ 14055778 (+) True AMCG00001078
AMCG00001079 mRNA upstream 365095 14006307 ~ 14007332 (+) True AMCG00001079
AMCG00001089 mRNA downstream 4563 14404322 ~ 14473499 (+) True AMCG00001089
AMCG00001090 mRNA downstream 77283 14477042 ~ 14497619 (+) True AMCG00001090
AMCG00001088 mRNA downstream 122905 14522664 ~ 14602340 (+) True AMCG00001088
AMCG00001086 mRNA downstream 219764 14619523 ~ 14623851 (+) True AMCG00001086
AMCG00001087 mRNA downstream 296881 14696640 ~ 14728187 (+) True AMCG00001087
TU160309 other upstream 2361002 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 4218240 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 5752232 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 12676180 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 12771788 1599696 ~ 1600639 (+) False AMCG00000723
TU161370 other downstream 770152 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 1009353 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 3623301 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 4146134 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 4155392 18555151 ~ 18558174 (+) False G129442

Expression Profile