RNA id: AMCG00001085


Basic Information

Item Value
RNA id AMCG00001085
length 248
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00001085
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14328300 ~ 14333025 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGTACATGCAATAGCAGCACACTTCCTGCACTTGTGAGAACACCTCTGATGATGCAGTCCTCATTGGATATCAAACCTTTTATGTCCTTTCAAGTGGATTCTAGTTCTCCTGTTGGACTCTTTCCCAATTTCAATACAATGGATCCTGTACAGAAAGCTGTAATTAACCACACATTTGGAGTGTCTATTCCTCCAAAGAAAAAGCAAGTTATCTCCTGCAACGTCTGCCAGCTCCGTTTTAATTCA

Function

GO:

id name namespace
GO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161007 lncRNA upstream 243370 14084286 ~ 14084930 (+) True G128402
TU160870 lncRNA upstream 864818 13461666 ~ 13463482 (+) True G128294
TU160823 lncRNA upstream 945656 13357491 ~ 13382644 (+) False G128255
TU160825 lncRNA upstream 968562 13357491 ~ 13359738 (+) True G128255
TU160704 lncRNA upstream 1487292 12837651 ~ 12841008 (+) True G128171
TU161297 lncRNA downstream 440593 14773618 ~ 14776723 (+) True G128662
TU161300 lncRNA downstream 443834 14776859 ~ 14779441 (+) True G128663
TU161347 lncRNA downstream 738048 15071073 ~ 15073902 (+) True G128697
TU161406 lncRNA downstream 877328 15210353 ~ 15211325 (+) True G128747
TU161435 lncRNA downstream 992969 15325994 ~ 15326220 (+) True G128772
AMCG00001082 mRNA upstream 64247 14225730 ~ 14264053 (+) True AMCG00001082
AMCG00001078 mRNA upstream 272522 14016104 ~ 14055778 (+) True AMCG00001078
AMCG00001079 mRNA upstream 320968 14006307 ~ 14007332 (+) True AMCG00001079
AMCG00001074 mRNA upstream 392460 13925452 ~ 13935840 (+) True AMCG00001074
AMCG00001075 mRNA upstream 479438 13846399 ~ 13848862 (+) True AMCG00001075
AMCG00001083 mRNA downstream 10723 14343748 ~ 14351478 (+) True AMCG00001083
AMCG00001084 mRNA downstream 39402 14372427 ~ 14399759 (+) True AMCG00001084
AMCG00001089 mRNA downstream 71297 14404322 ~ 14473499 (+) True AMCG00001089
AMCG00001090 mRNA downstream 144017 14477042 ~ 14497619 (+) True AMCG00001090
AMCG00001088 mRNA downstream 189639 14522664 ~ 14602340 (+) True AMCG00001088
TU160309 other upstream 2316875 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 4174113 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 5708105 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 12632053 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 12727661 1599696 ~ 1600639 (+) False AMCG00000723
TU161370 other downstream 836886 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 1076087 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 3690035 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 4212868 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 4222126 18555151 ~ 18558174 (+) False G129442

Expression Profile