RNA id: AMCG00001091


Basic Information

Item Value
RNA id AMCG00001091
length 5087
RNA type mRNA
GC content 0.52
exon number 51
gene id AMCG00001091
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14732692 ~ 14761267 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTAATGGTGCTACAATAAACTGCATCTCTACCTGAGCATACAGAGTCTCATGTCTAAGTAGTAGACATGACGAGCTGTATACAGATGTCAGTGTTGGCCCTCCTTGCAGTTTTGCAGGTTTCCTTGGTAGGAGCACAGATAAAGAAAGGGGTGTGTAAACATAATGGCCAGATTTATAATAACAAAGAAGTCTGGAAACCTGATCCCTGTAAGATCTGTGTTTGTGACACTGGCACAATACTGTGTGATGCAATAAATTGTGAAGACATGGACTGTCCGGATCCTGTAATTCCTCCTGGCGAATGCTGTCCAGTTTGTCAAAATGACTCCCCAGATcaAACCGTAAGTGGTGGAAATGGGCAGAAAGGAGAAAAAGGTGATAGGGGTTTACCTGGGATTCCTGGATTAGAAGGGCCACCCGGCGTTTCCGGGCCCCCTGGACAACCAGGAGTGTGTGAGGGCTGCCCTATGCTTGGGATTCATGGTGAGCCACAGTTCGGGGAACcacaaataatatttcCGCCCGTACCTGAACCTGGTCCGCCTGGTCCGCCTGGTCCAACTGGTCCCTCAGGATCACCCGGAGAACCAGGACTCCCAGGGGAGCCGGGTCGTTCCCCACCACCAGGACAACCAGGACCCCCGGGACCTCCTGGCCCCTCTGGGCTAAGTTGCCGAGAATGTAAAGATGGAGAACCTGGAGCACCCGGACAAAAAGGAGATCGTGGTCCTCCTGGATTTCCGGGGATTAAAGGACATCCTGGTCAACCTGGCACACCTGGTCAAAAAGGCCCAAGAGGCCCGGATGGACCACCTGGACCTACAGGAAATACCGGACCCCCTGGACCCACGggTGAAAAGGGTAATGATGGGTTAAATGGTCCACCTGGACCACAGGGACAACGAGGAATGCCTGGCGAGAGGGGGCCCATGGGACCTCGAGGATCACCTGGTCTAAATGGAAAAGACGGATTACCTGGAAAAGACGGATTACCTGGTAGCCAAGGTTCCCCTGGACCTCCTGGGTTTGCTGGAATCCAAGGTCCTaagGGTGAAACGGGCTCCCCTGGAAGCCGTGGCGAAGATGGCACACCTGGTTCCAAAGGAGATCCTGGGACTCAGGGTCCTCCTGGTCCCACCGGTCTTCCTggCCTTCCTGGCAGAAATGGAGTAAATGGTCTTAAAGGGGCTATGGGCAATCCTGGTATGCCTGGACAAAATGGGTTACCAGGACGACAGGGTCCACCTGGGCCAACTGGGCAAAATGGCACACCTGGACAACGAGGATCTCCGGGTGAACCTGGAAAGGCAGGTGAAAGAGGAGAACCTGGTCCACAAGGTCTTAcaGGTAATGCTGGTCCTCCTGGTCCGACTGGTCCGACTGGAAGAGATGGATCGAAAGGTCTGCCTGGTGATCAAGGACCCGTTGGTCCACCTGGGCAGCCTGGAGGCAGGGGCATGAATGGACCTCCTGGCCCAACTGGATCGAGTGGTCCCAGTGGTGAAAAGGGTCCTCCTGGAGACCGGGGTTATACAGGCCCACCAGGACCCCAGGGAAGCCAAGGTGACCAAGGATCTCCTGGACCACAAGGACCTGCAGGATTAAGAGGCTTGCCAGGGTTTAGTGGCAGTCCTGGTACTGATGGAAAACCTGGACCTCAGGGACCGAGTGGTAAAAAAGGAGATACTGGTCCCCCAGGACCAACAGGTCCGAGAGGTCACATGGGTATCATGGGGCCCCCTGGTCCACAGGGTCCTGAGGGTGGATCTGGAAAGGATGGCGAGAAAGGCTCCCAAGGTCCTCGTGGGCAGCCCGGTGAACCTGGGAAGAATGGTGATCCTGGTCTAATGGGGCCATCTGGGCCACCTGGAGCTGCTGGTGAAGCAGGACCAGCAGGGCCACCAGGACCCCAGGGCTTTCAgGGGCGAACGGGCAGTCCTGGCCCTCAAGGACCAAGTGGAAAGCAAGGAGATCCGgGTGCAAATGGACAGGATGGTACTCCTGGAAGTGCAGGTGCAAAGGGTGAGATAGGTGATCGAGGGGAGAGAGGCACTGCAGGCCCAGCAGGACCTCAAGGACCACCAGGAAATCAAGGTCCACAAGGATCAGTAGGACCAAAGGGACCTGCAGGTCCTATGGGTCCACCTGGTCCTACTGGGCTTGTTGGACATCCGGGTCTAATAGGTCTACCAGGTGCTAGAGGAATTCAAGGGCTAAAAGGTGAAAAGGGAGAAAATGGTGGCAGAGGTGTTGATGGGAAACCTGGAAATGATGGCAGCAGAGGTAATGTTGGTCCCATTGGCCCTCCTGGTCCAGGTGGCCCAAAGGGTGACAAGGGTGAGCCTGGACAGTCAGGGGGAAGTGGTCTCCCTGGACCACAGGGCGAGCGTGGAGAACGAGGAGAGCGTGGCTCACCTGGTACTGCTGGATTCCCAGGAGTCcctGGTCTGAAAGGGGAGCCCGGGCAGAAAGGGGGTAAAGGTTCTCCAGGGGAAAGGGGTGAGCGTGGTCCCCCAGGACTCGGAGGTCATGATGGACCTCAAGGGAAACAGGGACCTCCTGGTCCTTCTGGACAGAAAGGAAGCAGTGGTCCACCTGGTCCTATAgGTCCACCAGGTCACATGGGAGCACCTGGTCCCGCTGGCCAACCTGGACAGATTGGCAATGTTGGTCCTCCTGGTCCTGCAGGACCCACTGGTAAAACGGGCTCCATAGGACAACCTGGAAAAACTGGTCCCGTTGGCAATCCAGGCGGGCCAGGACCTAAAGGAGAAAATGGGCCTCCAGGCGAAACTGGGCCTGCAGGAGAAAGTGGAAAGCCAGGTCCTGTGGGAGAACGTGGGTCCCCGGGTCTTCCTGGACAAAGAGGATTCGCTGGACTGCGGGGTCCACAAGGTCCACCAGGACTCCACGGGCTGCAAGGTGATAAAGGGGAGGCAGGAAAGGATGGAATTAATGGAGTCCCGGGTGAAAAGGGGCTGCCAGGGCCACGTGGGCCTGCAGGAATACCTGGCATTGTAGGGCTACCTGGCAAGGATgGTAATCCTGGCAATGATGGTGTACCTGGAACTGATGGCATTCCTGGTGCTAAGGGAGAGCGTGGTGAAAATGGTGAACCAGGAAGTGCTGGGCCTCCGGGACACCAAGGTCTGCCTGGGTTGTCTGGGATTCCTGGAAAGAATGGTGAACGAGGAGAAAGGGGGGAGAAAGGTCCCCCAGGAATAGCTGGTGCTCCTGGGTTCGTTGGGCGTCCTGGTGCTGCAGGTCCTCCTGGAGCGAGGGGAGAATCTGGCCCGGCTGGTGAACAAGGACCGAAAGGGGAAAGAGGTGGTCAGGGTTTCACTGGACCTGCAGGTCCCCCCGGCTTGCAAGGGCCATCTGGTCCACAAGGAAGTGTTGGACCTATGGGTCCTAAAGGCCCCTCTGGTCCTGCTGGCCCTCCTGGAAAAGATGGTTACAGTGGACACCCAGGTCCCATTGGACCTCCTGGTCCACGAGGTACAAGGGGTGAAACGGGTCCTTCGGGTCCGGCTGGTTCTCCGGGCCATCAAGGTCCTCCTGGTGCTGTGGGTCCTCCGGGTCCATGCTGTGATACACCAGGTCCAGGTCCAAATCCTTCTAAAGGTGTAGATCAGTGGGGTTATTATGGAGACCAGGCTATTGAAGGACTTGGTACTGCGGCAGAATTTGCTGCTACTCTGAAATCCATCAATGCCCAAATTGAAAACATCTTAACTCCAGATGGGTCGAAGAAGAACCCTGTACGTAACTGCAGAGATCTTAAATTTTGCCACCCAGAATTTAAAAGCGGAGACTACTGGATTGATCCTAACCAAGGCTGTAAAACAGATTCTATCAGAGCATATTGCAATATGGAAACTGGGCAGACGTGTGTAAATGCAACTATAAGTACTACACTACGCAAACAGTGGTGGAATGAACCGGTGACACCAAAAAAAACAGTCTGGTTTGGCGAATCTATGGATGGAGCATTCCAGTTCAGCTATGGTGAAGCTGATCTCCCAGAAGGGATTTCTGAAGTTCAGTTGGCATTCCTGCGCATCCTGTCCACTTCAGCCACTCAGGACATAACATACCACTGTAAAAACAGCATTGCATATATGGATGCCGAATCAGCCAATGTGAAGAAGGCCCTGAAATTGTTAAGTTTTGCTGATGCTGAAATAAGGGCAGAAGGTAACAAGAAAATGATGTACAAAGTCCAGGAAGATGGCTGCACTacacacactggcGAGTGGGGAAAGACAGTCTTTACATTCAAAACCTCGAAAACCATTCATCTTCCAATTGTGGATGTTGCACCTATGGATATTGGTAAACCAGACCAGGAATTTGGAATCGACATTGGTCCCGTCTGTTTCTTGTAAATTCATTCTTATTCTTCCATCAGGTCATCACACATTGTTCTTTGTTCTTCTGCTCTGTTTTGGGATTTGTGTATTGGTGCTTGACATCCAGTCCAGATGGCCTCTCAGCAACTTCATCTTGTGCAATTTGCCTGAATATCCCCCAAAGTACTGAATTACTTTTTCATCAAGCTTAAACCATTTTCAGTGCTAGCAAGATGAAGCAAGCAAAAGCTTTCTCTTCAGAAATTAGTGATGAGCTTGGTCtgagagaaaacatttttaccAAATTAAACTGCTTTGACAAAATAAGGACATCTATGTTGttgtagtttctttttttatcagctgttaaaaaataatatacaaaaagttCAAACCGTTTTAGCTGATGTaattatcagtacatttaatatttcattatgcAGCTAGAAGAAACAcgtgaaattgaaaatgaaaaaaaaaaatatggtgCTAAAAACGTTTTACTCTTTAACATGtattataatacaaacaaattctCTCTTTATGAATACCTGTGCTGGGAGTCATCATAATTTCTCACTTTGAATGCCATTTCTCTATTGTCATTATGTGGTCAATGGTGTTTATGTGGTACACACATAAATAAGACAACATATTTTCAGTATCTTTAGTGCATCCTCATGGTACCTGTAGTATCCTCACATTTGTGGAACGAATGGGTTGAATAAAGAA

Function

GO:

id name namespace
GO:0031101 fin regeneration biological_process
GO:0030278 regulation of ossification biological_process
GO:0033334 fin morphogenesis biological_process
GO:0033339 pectoral fin development biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19720 COL3A; collagen type III alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161262 lncRNA downstream 109559 14619572 ~ 14623133 (-) False G128631
TU161264 lncRNA downstream 111767 14619572 ~ 14620925 (-) True G128631
TU161250 lncRNA downstream 130362 14589025 ~ 14602330 (-) False G128624
TU161320 lncRNA upstream 12295 14773562 ~ 14775639 (-) True G128676
TU161317 lncRNA upstream 12367 14773634 ~ 14775639 (-) False G128676
TU161327 lncRNA upstream 195574 14956841 ~ 14957052 (-) True G128681
TU161353 lncRNA upstream 310651 15071918 ~ 15073870 (-) True G128703
TU161518 lncRNA upstream 602800 15364067 ~ 15433140 (-) False AMCG00001118
AMCG00001093 mRNA downstream 104982 14624425 ~ 14627710 (-) True AMCG00001093
AMCG00001092 mRNA downstream 113684 14611686 ~ 14619008 (-) True AMCG00001092
AMCG00001081 mRNA downstream 579834 14149024 ~ 14152858 (-) True AMCG00001081
AMCG00001080 mRNA downstream 647906 14054414 ~ 14084786 (-) True AMCG00001080
AMCG00001076 mRNA downstream 750760 13963203 ~ 13981932 (-) True AMCG00001076
AMCG00001096 mRNA upstream 19939 14781206 ~ 14991380 (-) True AMCG00001096
AMCG00001097 mRNA upstream 233983 14995250 ~ 14998306 (-) True AMCG00001097
AMCG00001100 mRNA upstream 413905 15175172 ~ 15181842 (-) True AMCG00001100
AMCG00001099 mRNA upstream 423845 15185112 ~ 15187506 (-) True AMCG00001099
AMCG00001105 mRNA upstream 445626 15206893 ~ 15209203 (-) True AMCG00001105
TU161258 other downstream 134122 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 1372922 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 1981176 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 4032344 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 4454481 10274687 ~ 10278211 (-) True G127443
TU161398 other upstream 417974 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 602800 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 799078 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 2411603 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3763625 18524892 ~ 18525543 (-) False AMCG00001193

Expression Profile