RNA id: AMCG00001092


Basic Information

Item Value
RNA id AMCG00001092
length 3736
RNA type mRNA
GC content 0.37
exon number 9
gene id AMCG00001092
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14611686 ~ 14619008 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTACAGCAACCCAGCATGCCTGGATCATCTGGTTGTAGATTACGCCACTGTACTTAAGATATTGGGGCGATTGTGAATAGTAAATAGCTTGtaggggggttgggggtgggagCTGTGTTTTTCTAACTGATTTCTATGAATTATGGAAGGAATTCTGTACAAGTGGACAAATTACATGACTgGATGGCAGCCCCGCTGGTTTGTTCTGGATAATGGAATCCTTTCCTATTATGATTCTCAAGATGATGTATGCAAGGGCAGCAAAGGAAGTATTaaaatgtcagtgtgtgagaTCAAAGTCCATCCTACTGACAATACCAGACTGGAGCTAATCATACCAGGAGAGCAACACTTCTATGTTAAAGCTGTCAATGCCGCTGAGAGACAGAGGTGGCTGGTGGCCCTTGGAAGTTCAAAAGCCTGTTTGACAGACATCcgaacaaaaaaagagaaagaaatcagTGAAACGACAGAGTCTCTCAAAACAAAGATGTCTGAACTGAGGCTGTACTGTGATTTATTGATGCAGCAGGTCCACACTATACAGGAATCAGTGGACCAGGAAGCAAACCACATATCCCCCAGCATTGAGAACATGAATGAAGCCTCTTCATTACTGAGTGCCACTTGCAATACTTTTATTACAACGCTGGAGGAATGTATGAAGATAGCAAATGCCAAGTTCAAGCCAGAAATGTTCCAGTTAACTCCTCCAGACCCAGTTGTTTCTCCAGTTTCTCCATCCCCAGTGCAGATGGTTCGGatGAAACGATCTATCAGTCATCCTGGTACCTACAGTTTTGAAAGGACAAGCCACTCGCCAAAGGAACCTCTGTCTTCACTTCAGCGCTTATCACACAGACGAACCCGGACTTATTCAGACACTGAGTCGCACAGTGATAGTTGCACTGAAGATGTAGACAGGACTGCACAGTGTTCTAAAAACAGTGTCAACGGTGATTTTGCTCCATCTACCATCCCAGAAGAAACCAGCACGAGTTTGAGGAAAATATCAGAGATAGACAGTCCAATTATGGCACTATCATCCTGAAAATAATGGAAACCTGTAGTGTCAGCCTTTTACAAAGAAATTGCTATGCAATCACTGCTGGCATTGCGTTACTTGCATAATGGGAAGTACTCTATTATTTCCTGTAGAAGGATTTCTTtgcactttaaataataatgtaaacagaaatgaaaccttattttattgttgtttgtattcttccaagtatttttttttctatcaattTGCCAGAATAATATGTGAAGGCTGTAATGtgaatttataataatgatgatgttaCATActcaaaagtgaaaaaaaacaagcttgtACAATTCCAAAAGCGTATTGACAACTGACAACCACCTTCATGGAGAGGTACGTTGAATGTGCCAAGGACCAATAAATATCTGAATGGTGAgaacatttccatttgttttttttttcaggcttAATATATcctagggctggattaaatcaaaaccttgacccacccgctaatggcaaactacaaacctgtacatcatagcggttacatttatgattagaagaaagtggcatcttattaAAATTGAAGCAACTGAgaacagttctgtagttttccattagAGGGTgcgtcaaagttttgatttaatccagcccctggTCTGCCATCCTCTTACAAAGTTACAGAAGAGTAAAATAGGCAAAGGTATGCAACAGCAATTAAAATGGCCAATCCTATTTCCTTCAACCAAATCTGTCAATGATAAACtttcagataaataaatcaggTCTCGTAAGATTGTTTATTGCCATTTCAAACAGTGTTATTTCTGGGGCACAATGTACTCCCagttttctgaaaacatttgtaaacCTTTAAAACTGCGAATctagcaaaaaaaacaaaaaacgatttAAAGACTTTTTGTTAGAATTTTAATAAGGCTTCATTTTGGCTCTggagtaaaacattttttgaaggTTGTCTCCTACTGTTTGTGCATTAGCAGTTCTGGTCATGTACATGTTTAGCAATTAAACAATCATTCCCATTGTTTAAACAAAGACTGCAGAATAATGCATTATGTGGATTAGCAAGGACATGCATCACGTTAGCAATGtggcatttaaacatttcaagtGTGTCAGGTACAGTGGCCTTCACATTACAgctacatatatatgtatgcctgtgtgtgtgtttgtctgtattaATATCGGTCTTTGTCAGTCCTTTGCTGGAAGAACACATCCCAAAGATGTCTccatttgttttgatgtacagtgtctcttttccaggtcacaccagcaacaTTTCTGATTTCTTTCATCTCcccatctgtatgtgtgtgtttatgtttgtgtgtgtgtttttttttgtatccctaTATTCAATGGCAAACAattaactgcattatttttcattgccttttatttttagtttgcaCACATGGGATGCCAGTGCTCTAAAAGATAATGGTAGTTAGTCTCTAAAGAATCGGCAGTCTGTTGAGTCAATGTTGCAGTGTCTGTCACACTTCAGTTCTCCATAAGACCTGCAAGAGATTCAACATTTATCAGATTTAAGAATTATGGCATTTCAGCAGATGAATAGTCAAATAGTTGCAATTGAAATAGTCTGTAAATAGTATTATGTAAATAGTTcttgtacaataataatatgacattttaaatgacttaattgtgtgtatattaCTTATTCAGTGAAATCTTGTCAAATACCAGAATGACGCCTCTGAAGACAATTATCACCTAGTAGAGTGTACGTACCCTGGCAAATAAGAGGCACATGTAAGTTTTCCTAGATCTTGCTGGTCACATTCCTCTACTCCCACATGCCTGTGGCCATCCCCACAGAAAGCATCTAGACaatctgATACAACTGTCTGATTTTTCCTGATTCCCATCGTCACAGTCTTCTCCATGTTCTGAATTACGAACGCCATCACTACAGTATTTCTGAGGATGTGTTACCGCTGACTGAgggttaaattatatatacagagagagattaTGAATTATAATACTTTGTTACATTTACATCGGTACACTTGCaatgatttttatgttttcattttttttcttttttcttttgtttactgGTAACGGAAGCTGCAATGTGTAGGCAAGGAGTGATCAGATTACCTGGGTGATATGATTTATAGTTTACTCATGCATGTGGAATACATTTGAGAAATAATTTTACTGCAAGTTGAATGTATCTGTCTTAAATAgtgtttcagtttttcactGTGTTATCAGTACGTACACACCTTAATTGGGCTAAACTCACTGCCGTTAAAGACATATAACATGCGAGTGTCCCTTCTTAAgatgaaaatattttcaaattttagCTGGGACATCTCCTCTTCATTGTTCACAATAAATATCTGAAGTCGAGAAAGACAAATAGATATTTACAAGACAAGCAGTGTTTAATAGGATACAATTCTGACTGTAAATCACTTATTTAAGGATACATtctatattatttgtttaattgctttattattttccccaccAGACAGACATGTTGTTATATCAAAGAGACAGAATTCGCTGGCAATACTCACAAATGGAATTTCATTGAATTCTGGTTCTTTTTCTGGTTGATACATATTTTGCTGTGCACAGTCACATTTCTCTGTTGTACCATTAACACCTTTGTCCCCCTTTGGTCCAGGTACAAGGTGAACTACAAAATAAAGAGTGGAGGGA

Function

GO: NA

KEGG:

id description
K20313 PLEKHA3, FAPP1; pleckstrin homology domain-containing family A member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161249 lncRNA downstream 9356 14589025 ~ 14602330 (-) False G128624
TU161250 lncRNA downstream 9356 14589025 ~ 14602330 (-) False G128624
TU161251 lncRNA downstream 9356 14589025 ~ 14602330 (-) True G128624
TU161255 lncRNA downstream 19097 14590502 ~ 14592589 (-) True G128627
TU161256 lncRNA downstream 20216 14590502 ~ 14591470 (-) False G128627
TU161262 lncRNA upstream 564 14619572 ~ 14623133 (-) False G128631
TU161264 lncRNA upstream 564 14619572 ~ 14620925 (-) True G128631
TU161320 lncRNA upstream 154554 14773562 ~ 14775639 (-) True G128676
TU161317 lncRNA upstream 154626 14773634 ~ 14775639 (-) False G128676
TU161327 lncRNA upstream 337833 14956841 ~ 14957052 (-) True G128681
AMCG00001081 mRNA downstream 458828 14149024 ~ 14152858 (-) True AMCG00001081
AMCG00001080 mRNA downstream 526900 14054414 ~ 14084786 (-) True AMCG00001080
AMCG00001076 mRNA downstream 629754 13963203 ~ 13981932 (-) True AMCG00001076
AMCG00001077 mRNA downstream 651643 13939711 ~ 13960043 (-) True AMCG00001077
AMCG00001073 mRNA downstream 767285 13820019 ~ 13844401 (-) True AMCG00001073
AMCG00001093 mRNA upstream 5417 14624425 ~ 14627710 (-) True AMCG00001093
AMCG00001091 mRNA upstream 113684 14732692 ~ 14761267 (-) True AMCG00001091
AMCG00001096 mRNA upstream 162198 14781206 ~ 14991380 (-) True AMCG00001096
AMCG00001097 mRNA upstream 376242 14995250 ~ 14998306 (-) True AMCG00001097
AMCG00001100 mRNA upstream 556164 15175172 ~ 15181842 (-) True AMCG00001100
TU161258 other downstream 13116 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 1251916 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 1860170 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 3911338 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 4333475 10274687 ~ 10278211 (-) True G127443
TU161398 other upstream 560233 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 745059 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 941337 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 2553862 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3905884 18524892 ~ 18525543 (-) False AMCG00001193

Expression Profile