RNA id: AMCG00001093


Basic Information

Item Value
RNA id AMCG00001093
length 1108
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00001093
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14624425 ~ 14627710 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACTATGTTTGTAGCAGCCACTAAAAATTTTGTGAAACAAGTTGGGGATACAGGAAGACTCATTCCTGTCCCCAGTCTGAGTGAAGCTGACAGATATCAGCCTCTTAGTCTGGTGACCAAGAGAAAGAAGTCTCAtttctggaaaaaaactaaatatgccTCCACTCCATTCTCTTTGAAAGATATACTTGTGGGAGAAAAGGAGATAACAGCAGGTGTCTCCTCCTATCAACTGCTTAACTATGAAGACAAGTCCGATGTGTCCCTGAATGGCCGACTGGGAAACCAAATAATCAATGACGTTGGCTTTAACATCAGTGGATCAGACTCTGTAGCTGTTAAAGCCTCCTTTGGAATAGTAACAAAGCATGAAGTGGAAGTACCAACTTTGCTTAGAGAACTCAGTTCAAGaaaagtaGACCTTGAACACTGTTTGGTGCGCCAGTCCAAGGATAGTGGACGAGCCGTGTTGTGTGTTGTAATGGAAAGCATCCGTACAACACGTCAGTGCTCACTTACAGTACATGCAGGCATCCGAGGAACAACCATGAGGattGATGATGGACGGAACCACAAAGGTCGTGACAAGGCAATTGTCATCCCAGCTCATACAACAATAGCATTTAGTATATTTGAACTTTTTGTTCGATTGGATGGCCGTCTTGATCTCTGTGTCACTTCAGAGTCCACTGGTGGAtttgaaaaagaacaaatcagAGAGCAACTTGGAGGTTTCCTTGGAAGGTTTTCAGTGGGACGGTTGAGGAGGTTTTTGTCAGGCATTGTCTATGGAAACCCATTCCGAGCAGACGATAGAACATTTGATGAAATTACCAATTCTGACATCTATATGGAAGATATGGCTGCCGACTACTATGAAAAAGCCACCAGCATGACTGACGTTTCCACCAGCTACCTCAGAGAAGGCTCTCACACTCGAATCAACCTCCTGAACCACAATATTCCCAAAGGCCCTTGTGCACTCTGTGGGATGGGAAACCTAAGAAGAGAGACTGTGTATGGGTGTCTCGAGTGCTCCTCCAATGGACACAAATATGTAAGACTGCACGTTGTGCCTTGCTTTGACCTGTGGCACAAAACAATGAAg

Function

GO: NA

KEGG:

id description
K22147 PJVK, DFNB59; pejvakin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161262 lncRNA downstream 1292 14619572 ~ 14623133 (-) False G128631
TU161264 lncRNA downstream 3500 14619572 ~ 14620925 (-) True G128631
TU161249 lncRNA downstream 22095 14589025 ~ 14602330 (-) False G128624
TU161250 lncRNA downstream 22095 14589025 ~ 14602330 (-) False G128624
TU161251 lncRNA downstream 22095 14589025 ~ 14602330 (-) True G128624
TU161320 lncRNA upstream 145852 14773562 ~ 14775639 (-) True G128676
TU161317 lncRNA upstream 145924 14773634 ~ 14775639 (-) False G128676
TU161327 lncRNA upstream 329131 14956841 ~ 14957052 (-) True G128681
TU161353 lncRNA upstream 444208 15071918 ~ 15073870 (-) True G128703
TU161518 lncRNA upstream 736357 15364067 ~ 15433140 (-) False AMCG00001118
AMCG00001092 mRNA downstream 5417 14611686 ~ 14619008 (-) True AMCG00001092
AMCG00001081 mRNA downstream 471567 14149024 ~ 14152858 (-) True AMCG00001081
AMCG00001080 mRNA downstream 539639 14054414 ~ 14084786 (-) True AMCG00001080
AMCG00001076 mRNA downstream 642493 13963203 ~ 13981932 (-) True AMCG00001076
AMCG00001077 mRNA downstream 664382 13939711 ~ 13960043 (-) True AMCG00001077
AMCG00001091 mRNA upstream 104982 14732692 ~ 14761267 (-) True AMCG00001091
AMCG00001096 mRNA upstream 153496 14781206 ~ 14991380 (-) True AMCG00001096
AMCG00001097 mRNA upstream 367540 14995250 ~ 14998306 (-) True AMCG00001097
AMCG00001100 mRNA upstream 547462 15175172 ~ 15181842 (-) True AMCG00001100
AMCG00001099 mRNA upstream 557402 15185112 ~ 15187506 (-) True AMCG00001099
TU161258 other downstream 25855 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 1264655 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 1872909 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 3924077 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 4346214 10274687 ~ 10278211 (-) True G127443
TU161398 other upstream 551531 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 736357 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 932635 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 2545160 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3897182 18524892 ~ 18525543 (-) False AMCG00001193

Expression Profile