RNA id: AMCG00001094


Basic Information

Item Value
RNA id AMCG00001094
length 2262
RNA type mRNA
GC content 0.41
exon number 11
gene id AMCG00001094
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15061001 ~ 15070971 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cTATTTGTGTTGGCCAGCCAAGGCAATGAAACTCAGTCAGCACAGCAGGGGTACATATACACTGACATGGGAGTCACCAGGAATAAGATTGTGACGGCACAGTTTGAATGTCCTAAATGTAACAGCACATGGGACGGGTGGCTGTGCTGGGATGACACTGAAGCAGGCGTCATTTCACAGCAGCATTGCCCTGATTACTTTCAAGATTTTGATCCTTCAGAAATGGCAACAAAAATCTGCACTGACAACGGGGACTGGTTTTTGCATCCAGAAAGCAACAGGACATGGACGAACTACACAAAGTGTAATGAACGCACCAATGAGGGAATGAAGACGGCAATGAATTTATACTATTTGGCCCTAATAGGCCATGGCCTGTCATTAACatcattgtttatttcactggggatattctttcatttcaaAAGTTTGAGTTGCCAAAGGATAACTCTACACAAGAACCTCTTCTTTTCCTTCGTTTTAAACTCAGTGATCACCATCATTTGGTTGACAGCAGTGGCTAACAACCAGGAGTTAGTGGCAAGAAACCCTGCCAGCTGTAAAGTGTCCATGTTTATTCATCTGTATCTGTTCGGCTGCAACTACTTCTGGATGCTCTGTGAAGGAATATATCTCCACACTCTGATTGTTGTGGCAGTGTTTGCGGAGAAGCAGCACTTGATGTGGTATTATCTTCTGGGGTGGGgaTTTCCACTAATTCCTGCCTCGATACATGCAATAGCTCGCAGTTACTACTATAATGACAATTGCTGGATTAGTTCCAAAACAACTCTGCTTTACATTATCCACGGTCCCATCTGTGCGGCTCTGTTGGTGAACCTGTTCTTCCTGCTGAATATTGTGCGTGTTCTCATCACCAAACTAAAAGTGACACACCAGGCTGAGTCCAGTCTGTATATGAAAGCTGTGAGAGCCACTCTTATTCTGGTTCCACTCCTGGGAATTCAGTATGTACTGTTTCCATATAGACCACAGGGGCGGGTCGCAACTGAAATCTATGACTATGTGATGCATATCATAATGCATTATCAGgGGCTGTTGGTGGCCACCATTTTCTGCTTCTTCAATGGAGAGGTGCAAGCTGTGCTAAGAAGACACTGGAATCAGTACCGCATCCAGTTTGGAAGTAGCTTCACCCACTCAGATGCTCTGAGGTCTGCCTCCTACACAGTGTCTTCAATCGCAGACGTCCAGGGCTGCTACAACAATGACTGTAACACAGAACATTTAAACGGAAAAAGCTGCCATGATATCGAAACCACTGGTTTCAAATCTGAAAACCTTTATGCCTGAGAAGTGCCATTGACCACAGCAGTGCGGACTGATGGAGACCAGAGGGTCACTCACTTGGCAACCATGGAACACAGCCAACTCTGACTTTTCCCATTACAAACCACTTGAGcacaaaaaaaactcaaaactttaTTCCTATATACGTAGTCCGAACTGTGCCGTTACTTTCTTTAATTCAGAAGAAACAGACGCAGATATGGGGTTCTCTGAGGATCTTTCAttgcaatttataaaatatcaaAAGTATTGCAAGTTACTTCACTGCTTTTCTCTGCAAGGAAAAGGTAAATATTACTGTATCAGTCTTAATGCAAAGCACTGTACTCCTCTCATCAAACAAGGCATTAGGGTAACGGAATACGCAAGCAGTGATTCTAAATAAAATTACCCTTTTGTTATTTAATAGCACTGAATTTTGTGCCAAATGTGATAATAGCAACATGAAGTGCTCTGTGTGCCAAACTGTGGACTGCCCTTCACTACTTTGTTTGTGCTCTTCAACAAGAAACTTAAGACAGTTAACTGTGGACTTGAGGGAAAATGAGGCTGATGAAAGTGCTACCTTGTTGTTTGACTTGACTTGTTTAAAGCTCACCTGAACAACCCTGGAGGTCATCtgtatcagtattattatattttcagttcATATTATGATGACGGTGATATTATTGTTTGGGtcatttttggtttcattttatttcttttttttattttatttttatagaaaaaGGGCCTGGACCAAATACAAAATTTGACCAACCCCACTAATCACAAATATGTCAAACAAATATCaccaaacatgttttattattgtaatttgtgtttggcaggtcaaagttttaatttgatcCTCTTCAAAATTGTACTTttaagtatatgtgtgtgtgtgtgtgtgtatgtgtgtatgtgtatatatgtatatgtgtgtgtgtatatatatatatatat

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0001756 somitogenesis biological_process
GO:0001525 angiogenesis biological_process
GO:0048844 artery morphogenesis biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004948 calcitonin receptor activity molecular_function

KEGG:

id description
K04577 CALCRL; calcitonin receptor-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161300 lncRNA upstream 281560 14776859 ~ 14779441 (+) True G128663
TU161297 lncRNA upstream 284278 14773618 ~ 14776723 (+) True G128662
TU161007 lncRNA upstream 976071 14084286 ~ 14084930 (+) True G128402
TU160870 lncRNA upstream 1597519 13461666 ~ 13463482 (+) True G128294
TU160825 lncRNA upstream 1701263 13357491 ~ 13359738 (+) True G128255
TU161347 lncRNA downstream 102 15071073 ~ 15073902 (+) True G128697
TU161406 lncRNA downstream 139382 15210353 ~ 15211325 (+) True G128747
TU161435 lncRNA downstream 255023 15325994 ~ 15326220 (+) True G128772
TU161494 lncRNA downstream 287672 15358643 ~ 15359014 (+) True G128815
TU161502 lncRNA downstream 338141 15409112 ~ 15412710 (+) True G128823
AMCG00001095 mRNA upstream 25420 14998017 ~ 15035581 (+) True AMCG00001095
AMCG00001087 mRNA upstream 332814 14696640 ~ 14728187 (+) True AMCG00001087
AMCG00001086 mRNA upstream 437150 14619523 ~ 14623851 (+) True AMCG00001086
AMCG00001088 mRNA upstream 458661 14522664 ~ 14602340 (+) True AMCG00001088
AMCG00001090 mRNA upstream 563382 14477042 ~ 14497619 (+) True AMCG00001090
AMCG00001098 mRNA downstream 79304 15150275 ~ 15184392 (+) False AMCG00001098
AMCG00001102 mRNA downstream 158900 15229871 ~ 15241090 (+) True AMCG00001102
AMCG00001101 mRNA downstream 190780 15261751 ~ 15264010 (+) True AMCG00001101
AMCG00001103 mRNA downstream 198281 15269252 ~ 15283103 (+) True AMCG00001103
AMCG00001108 mRNA downstream 224133 15295104 ~ 15318438 (+) True AMCG00001108
TU160309 other upstream 3049576 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 4906814 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 6440806 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 13364754 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 13460362 1599696 ~ 1600639 (+) False AMCG00000723
TU161370 other downstream 98940 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 338141 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 2952089 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 3474922 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 3484180 18555151 ~ 18558174 (+) False G129442

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_12486758_12498650.mRNA True 2770 mRNA 0.42 12 CI01000009 12485626 ~ 12498650 (-)