RNA id: AMCG00001097


Basic Information

Item Value
RNA id AMCG00001097
length 1413
RNA type mRNA
GC content 0.60
exon number 11
gene id AMCG00001097
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14995250 ~ 14998306 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAATTTCGCTCAATCTTGCCCTTCGGGCTGCCTGCAGCGCTGGTGCTCGTGGCCTGGTGGTGGTACAGATCACGCAACCAGCAGCCCGACACCAGGACCAACACGGAGACCCCCAGACTGTCCAAGCCCCCCAGCCTCAGTGGCTCCTGCAACAGAGACACCCCCGTCCTCCAGGAGAAGAGCCTCTCCCAGGCCGAGGATGGTGCTGAAATGGAAGACGGTGCTGAAGATGGTCTGTCCGAGACCCCTAGCCTCACCGTCTCCTCCAGTGGAAACAGTGACTCCATCATGGAGTGGAGCTGCTACGAGGAGATCGGCCACAGCTCTCCACGGCAGGGCGCTGAGGTGGGCATTTGTGAGTTCATGAAAGACCTCCAACGTGTAGACAATCTGGAACCCGTGACAGGTCCACCGCCAACAGAGCTGAGGGGGCAGCGACTGACAGACTTCGAGTGCGTGGCCATTCTGGGGCGCGGTGGCTTCGGCAAGGTGGTGTTAGCCGATTACCAGCACACGGGACACATGATGGCCATCAAGGCCTTGAAAAAAGCAGAGATCGTGGCCCGTGGAGACATACACAGCCTCAGGTGTGAGAAGAGGGTCCTGGAGACGGTGCGAGACGAGCCATTCCTGGTCACGTTCTACGGCTCCTTCCAGACAGCACATCATGTGTGCCTCGTCATGGATTTTGCTCCAGGGGGAGACCTGACGATGGGCCCGTACACGGATATGTACTCTGAGCCCCGGGCCGTCTTCTATAGCGCCTGTGTGGTGCTTGGGCTGGAGGCCCTCCATAAACACTGCATTGCACACAGGGATTTGAAACTGCAGAATCTGCTGCTGGACGGACACGGCTACGTCAAGCTCAGTGACTTTGGCCTGTGCAAGGAAGGGATGGGACTGAACGACCGCACTAGCACCATGTGTGGGACGCCACAGTTTGTGGCGCCGGAGCTTTTGACGGAGACGTCCTACACCCGGGCCGTAGATTGGTGGGCCGTGGGCGTCCTCCTTTACCAAATGCTGGTTGGCAAGGTCCCGTTCAATGGAGCTGATTTCCATGAGCTCGCACACAGGATTGTGCATGATGACGTGAGATACCCGCGGTTCCTGTCCACAGACGCAGTGTCCGTCATCACAGGGCTCCTGGAGAAGAACCCCGAGAGGCGCCTGGGGGCCGGGGAGGGAGGCGTGGAGCAGCTGAAGAGCCATTCCTTCTTCGAGgGTGTGGATTGGGCTGCATTGCAGGCGAGGAGGGTGACGCCTCCCTTTGTGGCCCCCTGCAAGAACCCCGAGGTCCTGGGCCAATCAGCAGACCCCGTCCTCACGCCGCCTCTCGAGCTCAGAGCCCTGACTGAGGAGGAGCAGAACCTCTTCAGCGACTTTGATTACGTGGCAGATTGGTGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161327 lncRNA downstream 38198 14956841 ~ 14957052 (-) True G128681
TU161320 lncRNA downstream 219611 14773562 ~ 14775639 (-) True G128676
TU161317 lncRNA downstream 219611 14773634 ~ 14775639 (-) False G128676
TU161262 lncRNA downstream 372117 14619572 ~ 14623133 (-) False G128631
TU161264 lncRNA downstream 374325 14619572 ~ 14620925 (-) True G128631
TU161353 lncRNA upstream 73612 15071918 ~ 15073870 (-) True G128703
TU161518 lncRNA upstream 365761 15364067 ~ 15433140 (-) False AMCG00001118
TU161528 lncRNA upstream 408462 15406768 ~ 15409154 (-) True G128839
TU161524 lncRNA upstream 410904 15409210 ~ 15413192 (-) False AMCG00001119
TU161525 lncRNA upstream 410904 15409210 ~ 15413192 (-) False AMCG00001119
AMCG00001096 mRNA downstream 3870 14781206 ~ 14991380 (-) True AMCG00001096
AMCG00001091 mRNA downstream 233983 14732692 ~ 14761267 (-) True AMCG00001091
AMCG00001093 mRNA downstream 367540 14624425 ~ 14627710 (-) True AMCG00001093
AMCG00001092 mRNA downstream 376242 14611686 ~ 14619008 (-) True AMCG00001092
AMCG00001081 mRNA downstream 842392 14149024 ~ 14152858 (-) True AMCG00001081
AMCG00001100 mRNA upstream 176866 15175172 ~ 15181842 (-) True AMCG00001100
AMCG00001099 mRNA upstream 186806 15185112 ~ 15187506 (-) True AMCG00001099
AMCG00001105 mRNA upstream 208587 15206893 ~ 15209203 (-) True AMCG00001105
AMCG00001106 mRNA upstream 215999 15214305 ~ 15228862 (-) True AMCG00001106
AMCG00001104 mRNA upstream 243346 15241652 ~ 15251730 (-) True AMCG00001104
TU161258 other downstream 396680 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 1635480 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 2243734 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 4294902 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 4717039 10274687 ~ 10278211 (-) True G127443
TU161398 other upstream 180935 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 365761 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 562039 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 2174564 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3526586 18524892 ~ 18525543 (-) False AMCG00001193

Expression Profile