RNA id: AMCG00001100


Basic Information

Item Value
RNA id AMCG00001100
length 946
RNA type mRNA
GC content 0.35
exon number 4
gene id AMCG00001100
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15175172 ~ 15181842 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACGCCTTTTCCTTGTATCTGAGTTTTGCTCAGTTTGTAGGAATACGTGAATCCCGCCCAGATATTACCATAAACTTATTGGAAGACATCACACTGCCGTGAAAGTTACTGGAGAGAAATGGGTGATGCAATGGAATTCTCAGATGCTTCAGGAAGAAATCATGGTGAATCAGCAGATAAGGAAAAATATGCAGGCCCAATCAGCCAGTCTGTGCTTAATGATGAGGGGAGTACTGTCGTTGCCCCTGTAATTACAAATTCTACAGTGACAGACATTAGTGTGGACATAGAAAGCTCAACTGCCAGCAAGTTAAACAACAAGCAGCCTGCGCCAAATAAGAAGAATTTCCTGAAGAACATATGAAATTAGTCCATAAAGTAACAAATGTGGATCCTGTAATTGACCAGATAAACGTCAGAGGCTTTTCTGCTGAAGCAGTTAAAAATATCAGAGCACCGAACTGGAAAAGATGAGGAAGATCCTGGATTACACAAGAAGTATCAAGGCAGCCGAGGAAGTGATCCTCTTTGTGAAAGACCAGTTcattaaataacttttattCAATTGTGTTATATATGGCTTTTCTATAGTGCAAaggcatttaaattaattgtatttaagttaatcaatatatatacaaactagAAGTGCTTTTTTggcataattaaaatacatttctgttttgatatttttattgtatgatATTGGTATGAATAATGCAAGATACACATTTTGCAATGGATGTCAATTTAAGACCTATCTTTCAGGCAAAGCTCCATGTACCTTGATTCTTTATTGATTACATCATTACACAGGAAAGTCCACATTAAAAGTCTTAATCTACATTTGTATAATCTTAATgccaataatacaaattataataataattgtaaatactTCATTCATACTGAGTGGTATTTTGTTGAATGGGGATGTTTATTGGGA

Function

GO: NA

KEGG:

id description
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko00983 Drug metabolism - other enzymes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161353 lncRNA downstream 101302 15071918 ~ 15073870 (-) True G128703
TU161327 lncRNA downstream 218120 14956841 ~ 14957052 (-) True G128681
TU161320 lncRNA downstream 399533 14773562 ~ 14775639 (-) True G128676
TU161317 lncRNA downstream 399533 14773634 ~ 14775639 (-) False G128676
TU161262 lncRNA downstream 552039 14619572 ~ 14623133 (-) False G128631
TU161518 lncRNA upstream 182225 15364067 ~ 15433140 (-) False AMCG00001118
TU161528 lncRNA upstream 224926 15406768 ~ 15409154 (-) True G128839
TU161524 lncRNA upstream 227368 15409210 ~ 15413192 (-) False AMCG00001119
TU161525 lncRNA upstream 227368 15409210 ~ 15413192 (-) False AMCG00001119
TU161589 lncRNA upstream 280875 15462717 ~ 15463789 (-) True G128890
AMCG00001097 mRNA downstream 176866 14995250 ~ 14998306 (-) True AMCG00001097
AMCG00001096 mRNA downstream 183792 14781206 ~ 14991380 (-) True AMCG00001096
AMCG00001091 mRNA downstream 413905 14732692 ~ 14761267 (-) True AMCG00001091
AMCG00001093 mRNA downstream 547462 14624425 ~ 14627710 (-) True AMCG00001093
AMCG00001092 mRNA downstream 556164 14611686 ~ 14619008 (-) True AMCG00001092
AMCG00001099 mRNA upstream 3270 15185112 ~ 15187506 (-) True AMCG00001099
AMCG00001105 mRNA upstream 25051 15206893 ~ 15209203 (-) True AMCG00001105
AMCG00001106 mRNA upstream 32463 15214305 ~ 15228862 (-) True AMCG00001106
AMCG00001104 mRNA upstream 59810 15241652 ~ 15251730 (-) True AMCG00001104
AMCG00001107 mRNA upstream 82832 15264674 ~ 15268201 (-) True AMCG00001107
TU161258 other downstream 576602 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 1815402 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 2423656 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 4474824 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 4896961 10274687 ~ 10278211 (-) True G127443
TU161519 other upstream 182225 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 378503 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 1991028 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3343050 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 3373988 18555830 ~ 18558217 (-) False AMCG00001196

Expression Profile