RNA id: AMCG00001101


Basic Information

Item Value
RNA id AMCG00001101
length 1836
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00001101
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15261751 ~ 15264010 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtgtggaatctGTTGTGTTGTGAACTTGTCCTCCTCACAGTCGGCACTGGAGAAAACCCTGATTCGGAACCTGAAGAAGAGAGGACCCAGCTGTAGTCAAGAAGTAACCAAAACGGCAACTGATTTGAGCTACAGCTGTGTTTTCTCTGGCCATGTCCTTCATTTGAGAGGTAGCCTAACTCCTCAGCCATTGCAAGATGAGGCTGGGAACCTCTTCCTTTGGAACGGGGAAGTCTTCGGTGGCCTGGCGGTGAGAAGTGGAGAAAACGATACACAAGTTGTTTTCCAGattctttcaaaatgtgtcCGTGATGCAGATATCCTGTCTACTCTGTCATCTATTCAAGGACCCTGGGCTTTCATGTTTTACCAGGCAGACAGTCATTGCCTGTGGTTTGGCAGAGACTTCTTTGGCCGACGAAGTCTTCTCTGGCAGTGCGACGATGGAGGGAAGTCGGTTACTCTTACTTCTGTGGCTGCTTTAAAACCTGCAGCTGAGCACACAGAGTGGCAGGAAGTACCAGCTATTGGAGTTTATAAGCTTGATTTGAGGGCTGTTTCTCTGTTGGGATGTTTAGTTTTAGAGGTTTATCCTTGGAAATATTCTTGCCAACTAAGCTTAAACCATGACCTGAAATGGGAGGGCTTGTCCAACTGTGTGTCTTTAGTAATGAATGAATCTGATCTTTTCCTAACCGCTCCAGTTGTTCCCTTAAACGATACCATCCCAGAGACTCAGCCCGAGTTGCAGCATATGTTTAGTGCCCAGCCATCTTTTCAAGATCTCGATGTGTTATTGGAGAATGACGAAAAGAAGATACTAGCTTGCCAGCTTATAGATGTGTTAAGTGAGGCAGTGAGGCGGCGTGTCCAGAGCCTTCCTAGTGCATCCCTGTCGGAGTCTTCCAGTGACGGAGCAGATATTGCCATTCTGTTTTCTGGTGGTATCGACTCAATGATTCTTGCGATTTTAGCTGACCATCATATCCCTGGAGAAAAGCCAATTGATCTTTTGAATGTGGCTTTCCAATTGCAGGAACCGAAGAAGCAGAAGCAATctaccaaaaaactaaataaggaTAAGGACTGTGAAAAAGCCAAGGTTGATTCTGCTGAATGCAGTCAATCTGTATGTTTTGATGTGCCCGACAGAATTACTGGCAGGGCTGGCTTAAAAGAGCTACAGGCAATAAACCCGACGCGGAGGTGGAATTTTGTGGAAATCAATATTGTAAAGGAGGAACTTCAAGAaatgagacacaaacacatcagTCATTTGGTACATCCATTAGACACAGTGCTAGATGACAGTATCGGCTGTGCGGTGTGGTTTGCTTCAAGAGGAATTGGTTTTGCAGTAGAGGGCACGGACCGGCGACCATATACATCAACTGCAAAGGTAGTGCTCACTGGAATTGGTGCGGATGAGCAGCTAGCTGGGTACTCCCGCCATCGTGTTCGCTTTAAAACCTCAGGCCTGGAAGGGCTGGTCCAAGAGCTGGGGATGGAGCTGGGCAGGATCTCTTCACGGAATCTCGGCAGGGATGACCGGATCATCGGAGATCATGGGAAGGAAGCAAGGCAAGTGTTCCCGTTCCTGGATGAAGAGGTGGTGAGTTTCTTGAATGCTGTGCCAGTGTGGGCCAAAGCAGACCTGTCCTTGCCACGGGGACTGGGGGAGAAGCTGCTCCTCCGCCTGGCTGCCAGGGAACTGGGCCTTGCCGCTGCCGCCACGCTGCCCAAGAGAGCCATGCAGTTCGGCTCCAGGATCGCCAAAATGGAGAACCGCAGTGAGAAGGCCTCTGACAGATGCAACAGACTCCATGTTTCTTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161406 lncRNA upstream 50426 15210353 ~ 15211325 (+) True G128747
TU161347 lncRNA upstream 187849 15071073 ~ 15073902 (+) True G128697
TU161300 lncRNA upstream 482310 14776859 ~ 14779441 (+) True G128663
TU161297 lncRNA upstream 485028 14773618 ~ 14776723 (+) True G128662
TU161007 lncRNA upstream 1176821 14084286 ~ 14084930 (+) True G128402
TU161435 lncRNA downstream 61984 15325994 ~ 15326220 (+) True G128772
TU161494 lncRNA downstream 94633 15358643 ~ 15359014 (+) True G128815
TU161502 lncRNA downstream 145102 15409112 ~ 15412710 (+) True G128823
TU161512 lncRNA downstream 148770 15412780 ~ 15413107 (+) True G128827
TU161551 lncRNA downstream 196522 15460532 ~ 15462511 (+) False AMCG00001114
AMCG00001102 mRNA upstream 20661 15229871 ~ 15241090 (+) True AMCG00001102
AMCG00001098 mRNA upstream 77359 15150275 ~ 15184392 (+) False AMCG00001098
AMCG00001094 mRNA upstream 190780 15061001 ~ 15070971 (+) True AMCG00001094
AMCG00001095 mRNA upstream 226170 14998017 ~ 15035581 (+) True AMCG00001095
AMCG00001087 mRNA upstream 533564 14696640 ~ 14728187 (+) True AMCG00001087
AMCG00001103 mRNA downstream 5242 15269252 ~ 15283103 (+) True AMCG00001103
AMCG00001108 mRNA downstream 31094 15295104 ~ 15318438 (+) True AMCG00001108
AMCG00001109 mRNA downstream 54940 15318950 ~ 15323639 (+) True AMCG00001109
AMCG00001112 mRNA downstream 87075 15351085 ~ 15351360 (+) True AMCG00001112
AMCG00001114 mRNA downstream 197057 15461067 ~ 15463358 (+) True AMCG00001114
TU161370 other upstream 87604 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 3250326 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 5107564 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 6641556 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 13565504 1668845 ~ 1696247 (+) True AMCG00000729
TU161504 other downstream 145102 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 2759050 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 3281883 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 3291141 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 3624381 18888391 ~ 18889724 (+) False AMCG00001203

Expression Profile