RNA id: AMCG00001102


Basic Information

Item Value
RNA id AMCG00001102
length 3207
RNA type mRNA
GC content 0.45
exon number 21
gene id AMCG00001102
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15229871 ~ 15241090 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggggggtcagagGGCAGAGGTCAAAGTTAGCTGCCGGGAAAAAAGATGGTGGAAGAGGGAGAAATCCGCGTGGTTCGCTGTGGTGGCAGCAAAATAAACTATAGAAAGCCTCTTTTCACGTTAGACTCAAAgTTCTTGCTGTGCGCTTCGGGGGACTCGGTGAAAGTGTACAGCACGGCTACAGAGGAATGTGTGCATGTCTtacagggacacacggacctggTCACAGGCATTGCATTGAACCCTGCAAACCATCTGCAGGTGTATTCTTGCTCTGTAGATGGCACTGTTAAACTATGGGACTTCACAGATGGCATCCTCATTAAGacATTTGTAATTGGATACAAAATCCTCACCCTGCTGGTCTCATCAAAACATGAAGGCACCATTTTCATTGCAATTGCTATGGCCAGCAACGAAGAGTCGGATGCATTCCAGTTGGTGGCTCTTATGCTTCCAAAGGTACCAAATCGGAAGGTGGAAGCCAAAGAAATGTTTGCTGTATTGAGTGACATCAGTCCATCTCCCAAGACACTCTCCTTTGGAACAgggGGAGAATACATAGCTTCTGTGAAgggtctccatctctctgtgtattttttcaagaaGCAGAAGACTTACAGGTTCTCTTTGAAAGCCAGTGACAAGAAAGGAGTCAAGAACATATTCACATGTGTCTCTTGTCACCCAAAAGAGGACTGTATAGCCACTGGCCATGAAGATGGGAAGATAAGACTCTGgaGAAATTTCAATCAAAAAAAAGAGTACACATACTCTACACAGCACTGGCACCACAATGCAGTAAATGATTTGACTTTCACTCCCGAAGGTACTAATTTGCTCAGTGGCGGAATTGAATCCGTTCTGGTACAGTGGCGCTATGGGGCAGATACGAAGAAGGATTTCCTGCCTCGACTGGGTGCGGCTATCGAACATGTCAACGTTTCCCCTGATGGAGCCCTGTACTGCACCTCCCACAGAGATAACAAGATTACAATTATCCAGAGCAACCTGAGAGTCTCGGCTGTAATCCAAGGTTTAGTAAAAGGAGATGCCATCAGAACCAATTTAATGATTGACCCAAGGAGTAAAGCATTAGTGCTGAATGGGAAGCCTGGCcatttgcagttttattctCTACAGCATGACAAGCAGCTGTATAATCTGGATATAGTGCAGCAGGAGTATATCCACGAGTCGGGCCTGCACCAGTTTGAAGTGGTGAAAGCTGCGTTTGATGCCCAAGGCTCTTGGTTAGCAACAGttgaagaaagagaagaaaagtcATCTGCTTTTGAAATTATTCTGAAAATATGGGCGTATGATGACCAAACCCAGAGctttgtCCTAAACACCACCATAGCAGCCCCACATGAGGACCGGATTACAGCCCTCTGCTTCTGTAACTCCAACGATGCCACCATGTTAGTGACTACAGCCAAGGATGGACACTTCAAGGCCTGGCTCCTGGGGGATGATTCCAGTATTTATCGTCAGGGGGTGTGCTGGAGTTGTGACTTTGTTGGCAGTTACCACAGTCTAAAGGCGACAAACTGTTGCTTCTCAGCTGACGGCTCCTTGCTGGCTGTGAGTTTCCAGGAGATTGTAACCATATGGAACCCTGACTCCTGGGACCTCGTATGTACATTCTGTCAGCCTCCAGGGGAAATAAGGGATCTTTGTTTTGGGAGGCTAAGCTGTTCAAAGTACCTCCTTGGTACCACCACGAGTAACTTGCTCTGCTGCTGGAACCTGCTGACTTGTACATtGGAATGGAATGTAACTTTAAATGTCATTCGACTTGAGGCTGACCCTTTATCTGAAAATGTCGCTGTGTTCTCATGTGTATCGGAGAACTCTGACTTGTTTGTGTTCAAGCCCAGCGAGCCACGGCCACTGTTCTCCCAGAAGGCAGTGTGCCCGGGCGAAGTGCAGCATGCCGTCTTCACGCCCCGGGAGGTGGCAGAGGAGAGTTGCTCGGAGAGCTGCCAGTGGCTCAACAGGTCCCAGCTCTACTTCCTCAATAAGCACATGGACCTAATGACTTTCAGTACAAAGTCAGAAGACGACAGGATAATGGCTTCAAGTAAACGGCTTTTAATAGAGGAGAACATTCCTGCAACTCCGTTCTACCTGCTGCTGGGGAGACACcggcagcagcaacagcagcagcagcaggcccGGTCCGAGGGAGACGATTATCTGCTGGCATCTCGTGTTCAGCTTCCACAGGGTTCAGTTGTAATTAAAGAGTTACTTCAAACCCCGGCCCATGTCCTGCCCTCTGCTTCCTTCTTGTGCACGATGTTTGTCAACTCCTTACTGATCTCCAAGTCTGGAAACGGAGAGGTCATGGAGGAAGATGAAGAGGAAATAGAGAGTGGGAAAGAGGAAGATGCAGACTCTGAAAGGGAAATGGACTCTCGTGATTATCAGCAAGATGCCAAGTCTGAGTATTTTGAAGAAGAACTGGTTCTACCATTTTCTAAGTCTCAAGAAAAGGAACTGAAGAAATTGCGAAAAACAGACTACAGCTGGCTCTCCAATCCCCTGCAGCATTAGCCATGGGAATATACTCACACactcaaaagctttttttttttggactgaATGTtgatgcaataaaatatatttttcattgtgcAGAAAATTTTCCTTTACTGGTTAAGAAAGTGAATATCTTTAGACTTGGCCATATGCCATGGCAGTATTCCTCTCATTTTGACAGGTTTGAGCTTTCAGCTCTGTTTTGTACTTTAATAGCCTGTAAATGTTTCGCACTCATGACAAAATgtgaatgtgcatgttctaaaaacaaaagcaaagtctcgtttataaaagtatatatattctGCTCAAACAGCCTTTAACAGCGCACACCTCAAATGTGATCACTTCTCGTTTCACTCTGCAGCTCAGCAAATTCTCACATGACTGTAAATTTCTATGTTGTGAGCACTAGGTAGGGAAAATTTAAACTAAAGAGTTTCTGAAGTGGCTGCACAACATAATTGTAAATCTATATtccttgcattttaaattaccttGTGCAGgacattattttaagtgttttgtggTGTATAGCTAtcattttatatacacatttaaatcatgttaaacaatttaaagcagtgtttttagcTGTCATATATCTATTAAACCCATTTTGCCAAGTCTATACCTAATCGGGCATGTTAAAGGGTCCTT

Function

GO: NA

KEGG:

id description
K14552 NAN1, UTP17, WDR75; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161406 lncRNA upstream 18546 15210353 ~ 15211325 (+) True G128747
TU161347 lncRNA upstream 155969 15071073 ~ 15073902 (+) True G128697
TU161300 lncRNA upstream 450430 14776859 ~ 14779441 (+) True G128663
TU161297 lncRNA upstream 453148 14773618 ~ 14776723 (+) True G128662
TU161007 lncRNA upstream 1144941 14084286 ~ 14084930 (+) True G128402
TU161435 lncRNA downstream 84904 15325994 ~ 15326220 (+) True G128772
TU161494 lncRNA downstream 117553 15358643 ~ 15359014 (+) True G128815
TU161502 lncRNA downstream 168022 15409112 ~ 15412710 (+) True G128823
TU161512 lncRNA downstream 171690 15412780 ~ 15413107 (+) True G128827
TU161551 lncRNA downstream 219442 15460532 ~ 15462511 (+) False AMCG00001114
AMCG00001098 mRNA upstream 45479 15150275 ~ 15184392 (+) False AMCG00001098
AMCG00001094 mRNA upstream 158900 15061001 ~ 15070971 (+) True AMCG00001094
AMCG00001095 mRNA upstream 194290 14998017 ~ 15035581 (+) True AMCG00001095
AMCG00001087 mRNA upstream 501684 14696640 ~ 14728187 (+) True AMCG00001087
AMCG00001086 mRNA upstream 606020 14619523 ~ 14623851 (+) True AMCG00001086
AMCG00001101 mRNA downstream 20661 15261751 ~ 15264010 (+) True AMCG00001101
AMCG00001103 mRNA downstream 28162 15269252 ~ 15283103 (+) True AMCG00001103
AMCG00001108 mRNA downstream 54014 15295104 ~ 15318438 (+) True AMCG00001108
AMCG00001109 mRNA downstream 77860 15318950 ~ 15323639 (+) True AMCG00001109
AMCG00001112 mRNA downstream 109995 15351085 ~ 15351360 (+) True AMCG00001112
TU161370 other upstream 55724 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 3218446 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 5075684 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 6609676 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 13533624 1668845 ~ 1696247 (+) True AMCG00000729
TU161504 other downstream 168022 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 2781970 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 3304803 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 3314061 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 3647301 18888391 ~ 18889724 (+) False AMCG00001203

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074664 False 2784 mRNA 0.48 21 NC_007120.7 41120158 ~ 41153896 (-)