RNA id: AMCG00001104


Basic Information

Item Value
RNA id AMCG00001104
length 4702
RNA type mRNA
GC content 0.40
exon number 8
gene id AMCG00001104
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15241652 ~ 15251730 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGCCTGTGCATGCAGGAAAATTATCTTTTTGTGCAATTAGACTAAAAGGCCTTTTAGGTTTCAATATTGCTTTCCGACTTCAGCTACAGTGATAGCTAAGtttggaaaggagaaaataaaaggcaGTGTAGTCTTCTTTGCAGAAAGCAATTTTCAGTGCTTGCGCATCCATAAGAGTCAAATCATAAACAAAGGGATTCAATATATTGACTGGACAAAACTACTGAATATGGACAACACCGGATCCAAGAAAAGTTGCTGTGAATCTGTCAGCGCTTATTTCACATCTGCTAAGTTCCTTATTTACCTTGGACATGCTCTTTCGACATGgGGTGACCGTATGTGGAACtttgcagtttctgtgtttctggTGGAGCTCTATGGCAACAGCCTCCTGTTGACTGCAGTGTATGGGCTTGTTGTGGCAGGATCTGTGCTGCTGCTTGGGGCCATTATTGGGGACTGGGTGGACAAGAACGCAAGGCTTAAAGTTGCACAAACATCACTGATTGTCCAAAACTGTTCGGTCATTTTGTGTGGCATTCTGCTGATGGTGGTGTTCCAGTTCAAAGCACAGCTCACTGAAATGTACAATGGGTGGCTGCTGACAGCGTGCTACATAATGGTCATCACCATTGCAAATATTGCCAACCTAGCTAGCACTGCCACGTCCATCACTATTCAGAGGGACTGGGTTGTCGTGGTGGCTGGGGAAGACCGAAGCACGCTGGCAAACATGAATGCGACGGTGAGAAGAATTGACCAGTTGACCAATATCCTGGCCCCGCTTGCAGTGGGCCAGATCATGACTTTTGGCTCTCCCATCGTTGGCTGTGGATTCATCTCTGGGTGGAACCTCTGCTCCATGTGCCTGGAGTACTTCTTGCTCTGGAAAGTCTACCAAAAGACGCCAGCCCTTGCTTCCAAGTCTGGACAGAAGGAAGTGGACCAGGAATTGAAACAGCTCAATATTGAGAAAGCAGAGCTTGAAAGTGTCCAGAATATGGGGAAGAGGTCTCAGCTGTTGAACGAAGCTGCCTTAGCGAGTCACGCAGAGAAGAACAATGGCTGTTGCTATCAGATCATGGAGCCGTTCCGCACCTTCAGAGACGGATGGGTGGCCTACTACAACCAGTCAATCTTCTTTGCTGGCATGTCTCTGGCTTTCCTCTACATGACCGTCCTGGGGTTTGACTGCATCACCACTGGTTACGCGTACACCCAAGGCCTCAATGGCTCCATCCTCAGCATGTTGATGGGAGCCTCAGCCATCTCAGGAATCTTTGGCACTGTGGCCTTCACTTGGATCCGGAAGCGGTGTGGTCTGATCCGCACTGGGTTCATCTCAGGAATTGCACAGCTCTCCtgcctgctgctgtgtgtggccTCAGTCTTTACGCCTGGAAGTCCCTTTGACCTGACCGTGTCACCCTTCAAAGACATAATCAGTCATTTGATGGGAGACGGTCCCCTGCCAGAAGCCAACCCCACCACAGTGACCTCTCTTACCACAGAATTGCATGACCTGATCAATGGTTCCACGACAGTCTATGAGAAGGAGATGACACCTCAGGTCGAGTCTTACATATCTGTGAGCCTCCTATTTGCAGGGGTCATTGCTGCTAGAGTTGgtCTTTGGTCCTTTGATTTAACTGTGACCCAACTAATCCAAGAAAATGTGATCGAGTCTGAGAGAGGAGTCATCAACGGTGTCCAGAATTCCATGAATTACCTTCTAGACCTCCTGCACTTTATCATGGTGATTCTTGCGCCCAATCCCGAAGCCTTTGGTCTGTTGGTGCTTATCTCAGTCTCCTTTGTAGCCATGGGGCACGTTATGTATTTCAGGTTTGCATACAAAAGCTTAAGAAGTCGTCTCTTTTTCTGTTGCTCGCCCGAAAATAAAATTGAGACTGACAGTCCCTCACTTCCTGAGTCCGACAAGGTGTAACTGATGAAAGAGACATTATCCCTGTTAAAGGTTTCTTCGTAATGTGCAAGTAGCCCCGTTGATGGGGTGCATTCCAGCTATAAATATTAGATGCTTGCTTTGAGTTATAGCATTGTTACCTATGTTGTAGGTATCACTTGTTTGTCATCTTAGATTATATTAACTATGAGAGTAGGATTTGATGTAGGGTAGCAGATGTGTAGCATTTAAATATGCTATCTGACAGTTAAGGAAGCTCTGTGCACATTACCGAGTGGAGCTAGGAGATAAaccgtttttttgttttttatcttcgCACTCTTCTTGATCTGCAGCTATTATATGCTGATTTATGTAACTTTCAGCTTTGAAAGAGGAGATGTGAGGCACATTCTTCATGTCCAAAAGTACGTTCTTGGTTCTGTCAAAGAACAACATGAGGACGGTATGGGTTATCCCAAACAGCAGAGTTACAAGTCTTGGTGTGGAAGagtttgcaatttaaaaaaattgttgtGGACATGAGAAAACCATATAGTCAGCTATTGAGTAGATTAGTGTTAGGGTCAATGTTTTAGGAATTACTATTTTTGTAACTTACCAAAATATGTTTGTATCATTACATGACGTACCTATAGTATATAtttcttgtaattattttttacatggcGCTCCCCGTGTGACTGGGATAAGGTctctttaaaaatgatatacataTGTATCATAAATTTATATTCAGTATTGTATATGCCTTGTTGGTGGTTGTGTATTATTAACCTGTGTTATTGAATTCTTAAATGCTTTCAATGTTACCAAATGTTCTTAAATCAAggcagtgagggaaaaaagtttgtAAACCTACACACAGATTGAACTTTCTGTTAATTTGTGTTATATGACGATGGTTTAGGCAACTGAATGCTAAAAGACCTACATTTACCCCATggctaaaaaaacaaatgttgtttcCTAGCACTGTGACATTTTATGAAAACTTGTTTGATCAGAACcattttaaagctgtttaatTTTACTCATGATCGTCACACACGCactttttataatttctttcaataagaaaaactaaaggCACTTTCAGCTGTGTGGCATTTGATTTTATAGTACATCCTCTCAGTGTATCTGTAATGCATGTTCTAGCCCAAAGTCATGAATACTACTTTATGTTCTTGTGTGAACCATTATATCAAGTTTAGAATGGGCTTTCCTGTGTGCAGTTTGTTAGGGTTATAATCCAGTTCTACATATTATGTTAATACCACTATGTTTGCCACCTGGTCTCGTAATCCGGAGACTTGCTAATATAAGATGTTGGTTAGTACAGAAATCATGAATCGGTTAGCATAAAAAGAAGTGGTGTTGATATTCTATTTCCCACAGTCTGGGTATATTCAAGACACTAGGGTAGTCTGAGACCGTATGTCTTCATCTATTGTCTCAAGCATCCCAAATCTACAGTATGAGAAGATAAGTCTCAATTCCTTGAAGCTTTCCTCAGTTTTTCCCTATCCAGCTGTAAGCTTGAtgccagtttaaaaaaaaaaatacagcagccattTTAATTAGGAGGACTTGGTcatgaatgtaaaaaaacttttttttggggTTATATTAATTTTCCAGCACAAGCTTGCCTTAAAAAGCTATTCATCAAAAGTGCTTTGGAGAATGTTCTTGAGGTATGACAGGTTTCGTAACAAAAACATTGAGCTCAAACTCAAATGCCATATGGAGAGAACAGGGGAGCCCTTTTTGTCTTTGAGGGTGGGTTATTTAAGTACATCTGGCCAGTTTGTCAGGTTTATATTGGATTAACATTAGCTGGTTTCTGTAAAAATGTGCTGATGCCGGGAGTCCTTCTTAAAACTTTGCAAGAAATGTTTGGCACAGGTCTGTAGCATTTAACAGAAAGTTTCAAGTAAGCAAATTCTTCAGAATATGATACGGAAAACCTAAGTTTCCAATTTACTTTTCTAGAAGTTCACAAATCTCATTGATACACATGGCTCTGATCTTTGACTAACAACCTAACACATACTAGCATTGaatgttcattattttatctttttaattaagatAACATCTTGGTAATCATGttgtgtaacaaaacaaaaatacaaaattgtgtaCTGTATAGTTCTGTTGAAAAGGGATTATGGAAGACAATCACAGACAATGCTACCTTCAACTAAAACCACAAAGCTAATGAAATGTACAAGATACCAAGAAGGCCGAATGTAAAATGTGCACCATGAACAAATCCACCAGCCATGTGTTGTATCTTaacctttgaaatatttttacttGAGATTAAGTGATTTTATactgatacatttaaatgtattgaatactATGATTATAATTTAGAACTTTACCAATTATATATTGattgtatgaataaaaaaaataaaataaaaaaaaaacactccataGCTCAAACTGTGCAAATATGAAAGTTACCGTTTGTACTGCATGAGTTCTTTGAAATAAAGGTATCAAGATTCAATAGCAAACTCTTTGCCTCTTCTGTCTGAAAAGTACCCATCTCATCAAGTTTGCTGCTGAAAGAGAGGCCATATCAAGAGAGAGATCTCTGAGGCTACATGTCCACTATACACAATGTCTTGACTATTGGCCAGGAAACCATTGTATGAGGCCAAATTCCTTTGCGGGGCtacattgttatttgtttaaatggggCTTTCAAACAAGACTTATAAACAGACTGATCTTATACTGGATTGAATGTGAA

Function

GO:

id name namespace
GO:0034755 iron ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005381 iron ion transmembrane transporter activity molecular_function

KEGG:

id description
K14685 SLC40A1, FPN1; solute carrier family 40 (iron-regulated transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161353 lncRNA downstream 167782 15071918 ~ 15073870 (-) True G128703
TU161327 lncRNA downstream 284600 14956841 ~ 14957052 (-) True G128681
TU161320 lncRNA downstream 466013 14773562 ~ 14775639 (-) True G128676
TU161317 lncRNA downstream 466013 14773634 ~ 14775639 (-) False G128676
TU161264 lncRNA downstream 620727 14619572 ~ 14620925 (-) True G128631
TU161518 lncRNA upstream 112337 15364067 ~ 15433140 (-) False AMCG00001118
TU161528 lncRNA upstream 155038 15406768 ~ 15409154 (-) True G128839
TU161524 lncRNA upstream 157480 15409210 ~ 15413192 (-) False AMCG00001119
TU161525 lncRNA upstream 157480 15409210 ~ 15413192 (-) False AMCG00001119
TU161589 lncRNA upstream 210987 15462717 ~ 15463789 (-) True G128890
AMCG00001106 mRNA downstream 12790 15214305 ~ 15228862 (-) True AMCG00001106
AMCG00001105 mRNA downstream 32449 15206893 ~ 15209203 (-) True AMCG00001105
AMCG00001099 mRNA downstream 54146 15185112 ~ 15187506 (-) True AMCG00001099
AMCG00001100 mRNA downstream 59810 15175172 ~ 15181842 (-) True AMCG00001100
AMCG00001097 mRNA downstream 243346 14995250 ~ 14998306 (-) True AMCG00001097
AMCG00001107 mRNA upstream 12944 15264674 ~ 15268201 (-) True AMCG00001107
AMCG00001111 mRNA upstream 31769 15283499 ~ 15294775 (-) True AMCG00001111
AMCG00001110 mRNA upstream 86603 15338333 ~ 15342120 (-) True AMCG00001110
AMCG00001118 mRNA upstream 113037 15364767 ~ 15377934 (-) False AMCG00001118
AMCG00001119 mRNA upstream 157440 15409170 ~ 15432330 (-) True AMCG00001119
TU161398 other downstream 61330 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 643082 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 1881882 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 2490136 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 4541304 10697707 ~ 10700348 (-) False AMCG00000960
TU161519 other upstream 112337 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 308615 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 1921140 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3273162 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 3304100 18555830 ~ 18558217 (-) False AMCG00001196

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073519 True 3780 mRNA 0.43 8 NC_007120.7 41103127 ~ 41113878 (+)
grasscarp (Ctenopharyngodon idella) CI01000009_11803818_11808988.mRNA True 3370 mRNA 0.43 8 CI01000009 11802384 ~ 11809235 (+)