RNA id: AMCG00001107


Basic Information

Item Value
RNA id AMCG00001107
length 630
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00001107
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15264674 ~ 15268201 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgaaagctgtgattttaGCTGCGGGTTATGGGACCAGGCTGCGCAGAGACCTCCTCAGTGACACATCTGGCAGATTCGAGGCTCTGATCGGCTCCCCGAAACCGCTGCTTCCTGTGGGACACTGCCCTTTGATCTCACACTGGATCCAGGCTTTACAGAGTATTGCTTGTGTGGATGAGGTCTTTGTCATTACCAATGACTTGTACTATAAAAACTTTGAAGAATGGGCCCAGCAGTTCCCAGCTGTCAAAGTGCTAAATGATGGGACAAGGTGCAATGAGGAACGACTAGGTGCTGTTGCATGTCTTCAGATGGCAATTAGAAAATTCAAGATAGAGGATGATATTTTAATCATTGGAGGGGATACCTTATTCAAGGAAGATTTCAGCCTCTCAGGCTTCATGGATCAGTTTTTTGATCTACAAACCAAATGTGATGAAAGTAATCTGGTACTGTCATACGAGTGTAAAGATGAAGTCATGTTTGAACTGTTACTGCTTTATTTCAGGAAGCCTGTGTACATACATCAGATCTCTGGCCGTTTCGACGTTGGAAATCTTGCGTCCTATATAGAATGCGATGCCTACTTCAAAGACAAGCTGAAGGGTGATAGGGATTATTTAAAGTAG

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161353 lncRNA downstream 190804 15071918 ~ 15073870 (-) True G128703
TU161327 lncRNA downstream 307622 14956841 ~ 14957052 (-) True G128681
TU161320 lncRNA downstream 489035 14773562 ~ 14775639 (-) True G128676
TU161317 lncRNA downstream 489035 14773634 ~ 14775639 (-) False G128676
TU161264 lncRNA downstream 643749 14619572 ~ 14620925 (-) True G128631
TU161518 lncRNA upstream 95866 15364067 ~ 15433140 (-) False AMCG00001118
TU161528 lncRNA upstream 138567 15406768 ~ 15409154 (-) True G128839
TU161524 lncRNA upstream 141009 15409210 ~ 15413192 (-) False AMCG00001119
TU161525 lncRNA upstream 141009 15409210 ~ 15413192 (-) False AMCG00001119
TU161589 lncRNA upstream 194516 15462717 ~ 15463789 (-) True G128890
AMCG00001104 mRNA downstream 12944 15241652 ~ 15251730 (-) True AMCG00001104
AMCG00001106 mRNA downstream 35812 15214305 ~ 15228862 (-) True AMCG00001106
AMCG00001105 mRNA downstream 55471 15206893 ~ 15209203 (-) True AMCG00001105
AMCG00001099 mRNA downstream 77168 15185112 ~ 15187506 (-) True AMCG00001099
AMCG00001100 mRNA downstream 82832 15175172 ~ 15181842 (-) True AMCG00001100
AMCG00001111 mRNA upstream 15298 15283499 ~ 15294775 (-) True AMCG00001111
AMCG00001110 mRNA upstream 70132 15338333 ~ 15342120 (-) True AMCG00001110
AMCG00001118 mRNA upstream 96566 15364767 ~ 15377934 (-) False AMCG00001118
AMCG00001119 mRNA upstream 140969 15409170 ~ 15432330 (-) True AMCG00001119
AMCG00001117 mRNA upstream 167753 15435954 ~ 15445927 (-) True AMCG00001117
TU161398 other downstream 84352 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 666104 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 1904904 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 2513158 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 4564326 10697707 ~ 10700348 (-) False AMCG00000960
TU161519 other upstream 95866 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 292144 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 1904669 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3256691 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 3287629 18555830 ~ 18558217 (-) False AMCG00001196

Expression Profile