RNA id: AMCG00001110


Basic Information

Item Value
RNA id AMCG00001110
length 2043
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00001110
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15338333 ~ 15342120 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAAGCCCCGTGGAAATATATGACACCTATCAGTGTGGTGGATGGCGCAAAGTATAGAAAACTCTTCACTGCGTTCAGATACAGCGGGGATAAACACACACCGTTTACAGACATACGCCACCAAAAGCCTGGGAACATGCAACAGTCGCAGATCTTGGTGTACCTGAGTGTCCTGGTTGCGTTTGGTCCAGTGGGGCTGGGGAACATCACGGCGCAGCAGCCGGCGGACGCGGAGGAAGACAGCGCACGGTGCTCTGCGTGTGACAGGGAGAACAGCAGGCTCATGAGGCTGGACTCCATCAAGTCCCAGATCCTGAGCAAACTGCGCCTCAAGAGTCCTCCCAGCATCAGCCGGGACGTGGTCAAGCAGCTCCTGCCCAAAGCACCCCCGATGCAGCAGCTGCTTGACCAATACGACGTCCTGGGGGATGATAACAAGGACGCGTCTCTGGAGGAGGACGATGACCATGCCACCACAGAAACCATCATGACCATGGCTACAGAACCGGACTCCAGTGTCCAGGTGGACAGGAAGCCGAAATGCTGCCTGTTCTCCTTCAGCCCGAAGATCCAGCCGAACCGCATCGTCAATGCGCAGCTCTGGATACACCTGCGGCCCAGCGCCGAGCCCGCCACCGTGTTCCTGCAGATCTCCCGGCTCAAACCGGCCACCGACGGGAACAGACACATACGGATCCGCTCTCTGAAGCTGGACGTTACCGCAGGGACCAGCTCCTGGCAAAGTGTGGATGTCAAGCAAGTGCTGCAAGTCTGGCTAAAGCAACCTGAGACTAACCGCGGAATCGAGATTAACGCGCTCGACGCCAAAGGAAAAGACTTGGCCGTTACCTCTGCGGAGCCAGGAGAAGAGGGGCTGcaGCCCTTTATGGAGGTGAAGATTTCTGAAATTCCCAAGAGGATGAGGAGAGACTCCGGCCTGGACTGTGATGAAAACTCCCCCGAATCCCGATGTTGTCGGTACCCCCTCACCGTGGACTTTGAGGACTTTGGCTGGGACTGGATTATTGCTCCTAAACGGTACAAGGCCAACTATTGTTCTGGAGAATGTGAGTATATGCATTTGCAGAAGCACCCCCACCATCACCTGGTCAACAAGGCGAATCCCCGAGGTTCGGCCGGGCCCTGCTGCACGCCTACCAAGATGTCCCCCATCAACATGCTCTATTTCAACCGGAAGGAACAGATCATCTACGGCAAGATCCCTTCCATGGTGGTAGATCGCTGTGGCTGCTCATGAGCGTGCCAGCACAGCCTGGCATTTTCTTGAGACTGGACTTGAGAATGAAGAGATTTCATCTATCAGTGATTCCTGCATTTCCAAAATACTGTGCAATAGAACCAGAATAGCGGCAGATGCTCGAGACTGTTGAGCAAGTCTTTCAAAATCATCAAGGAGGTCAGATGTGCGGGCTGTggaaggttaaaaaataaaagtaaaagtttttgttttgttttttggacttgccaagaggaggaggaagcagCAGTCAAGATCATGGCATCTCTCGATGAACCTTTTCCCTTACATACACGCTTTTCAACACCTATGTTAAACTATCAGTAGAACTCATATATCCAGATTTCTGAGTGAAAACGAGAAGCCTGCAGGTCTTTTTGAGAGAGGCTTAAATGTTGGAATTGGAGATGAAGAGGGGGTGGGTCTGACTTTTTGTAACCATGCATCAGAAAGGGCTTCAGTTAATGTTAACATTTACATAAGAGGCATCATAATTCTGTAAACTATAGCTTTCCTATTACATTGCCACCTGAACTGCCCTACACACTTGAATTACTATTGTAAATCACCATTACTGGAAAGATGGACTTGAATCAGAGGCACTAAGAATGCAGCCTTCACATGGAAATATGTGAAAGGCagagaaatacaaaactgaTGAATGTTAATACCATGCTCACTCTGTCTTTCAAACAATACAGTTTGCACTATGGCAAACCAATAGAAAGAATTGGTTGCTACAAAAGTTGTAAAAACCgatttttaatatgtttgctaatttgtat

Function

GO: NA

KEGG:

id description
K05497 MSTN, GDF8; growth differentiation factor 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161353 lncRNA downstream 264463 15071918 ~ 15073870 (-) True G128703
TU161327 lncRNA downstream 381281 14956841 ~ 14957052 (-) True G128681
TU161320 lncRNA downstream 562694 14773562 ~ 14775639 (-) True G128676
TU161317 lncRNA downstream 562694 14773634 ~ 14775639 (-) False G128676
TU161264 lncRNA downstream 717408 14619572 ~ 14620925 (-) True G128631
TU161518 lncRNA upstream 21947 15364067 ~ 15433140 (-) False AMCG00001118
TU161528 lncRNA upstream 64648 15406768 ~ 15409154 (-) True G128839
TU161524 lncRNA upstream 67090 15409210 ~ 15413192 (-) False AMCG00001119
TU161525 lncRNA upstream 67090 15409210 ~ 15413192 (-) False AMCG00001119
TU161589 lncRNA upstream 120597 15462717 ~ 15463789 (-) True G128890
AMCG00001111 mRNA downstream 43558 15283499 ~ 15294775 (-) True AMCG00001111
AMCG00001107 mRNA downstream 70132 15264674 ~ 15268201 (-) True AMCG00001107
AMCG00001104 mRNA downstream 86603 15241652 ~ 15251730 (-) True AMCG00001104
AMCG00001106 mRNA downstream 109471 15214305 ~ 15228862 (-) True AMCG00001106
AMCG00001105 mRNA downstream 129130 15206893 ~ 15209203 (-) True AMCG00001105
AMCG00001118 mRNA upstream 22647 15364767 ~ 15377934 (-) False AMCG00001118
AMCG00001119 mRNA upstream 67050 15409170 ~ 15432330 (-) True AMCG00001119
AMCG00001117 mRNA upstream 93834 15435954 ~ 15445927 (-) True AMCG00001117
AMCG00001115 mRNA upstream 104329 15446449 ~ 15460505 (-) True AMCG00001115
AMCG00001116 mRNA upstream 121768 15463888 ~ 15474968 (-) True AMCG00001116
TU161398 other downstream 158011 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 739763 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 1978563 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 2586817 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 4637985 10697707 ~ 10700348 (-) False AMCG00000960
TU161519 other upstream 21947 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 218225 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 1830750 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3182772 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 3213710 18555830 ~ 18558217 (-) False AMCG00001196

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073511 True 2178 mRNA 0.46 3 NC_007120.7 40939336 ~ 40943137 (+)