RNA id: AMCG00001111


Basic Information

Item Value
RNA id AMCG00001111
length 1903
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00001111
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15283499 ~ 15294775 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCGTGGGGGTGAGTGAGGTTGTCGGCCTTCGTTTTCGTATCAGGATAATATTTTAGAGCAGACGTCTTTAATAAGCCACTTCTAACAAAATGAATGTAGGTGTTGCACACAGTGAAGTGAACCCCAACACAAGAGTAATGAACAGTAGGGGAATCTGGCTGACCTATGCACTTGGTGTTGGAATGCTTCATATCGTGTTACTCAGCATTCCCTTCTTCAGCGTACCAGTTGTGTGGACCCTAACAAATGTTATTCACAATTTGGGGATGTACGTATTCCTGCATGCAGTGAAGGGCACCCCATTCGAGACGCCAGATCAGGGCAAAGCCAGACTACTTACCCACTGGGAGCAGCTCGACTATGGAGTGCAGTTCACATCTTCAAGAAAGTTTTTCACCATCTCGCCAATAATATTgtACTTCCTGGCAAGCTTCTACACAAAGTATGATCCAACCCACTTTATTATAAACACTGCTTCTCTTTTAAGTGTGCTTATCCCAAAATTGCCACAGTTACATGGAGTCCGAATATTTGGCATCAATAACATACATATCAGAAGCACATCTATATTAAACTGTGTTTCTGAGTTGCGTCGACGACAAATAAAAAACGTGTTTTCAAACAGACAGTTATGCAGGCTGGTCTTGGGGATAGAGACGAGCTGCGACGACACAGCAGCCGCAGTGATGGACGAGACGGGCTCCATCCTGGGGGAGTCCTTGTATTCCCAAAAAGATGTACATTTAAAAGCAGGTGGGATAATTCCCCCAGTGGCACAAAGACTGCACAGAGAGCACATAGCTCGGGTGACCCAGGAGGCTCTAGACATGAGTGGAGTTGCACCCAGTGACCTGTCTGCTGTAGCCACTACTGTAAAACCCGGACTGGCCCTCAGTCTGGGAGTGGGGCTTGATTACAGTATAAAATTCATCCAGCAACATAAAAAGCCATTCATCCCAATACACCACATGGAGGCCCATGCTCTGACAGTCAGGATGATAGAGCCTGTTCAGTTCCCATTCCTGGTCCTGTTGGTCTCTGGGGGTCATTGTCTGCTGGCAGTTTCCAAAGGAGTCGATGACTTCCTTCTCCTGGGAAAGTCTCTGGATGAAGCACCAGGAGATATTTTAGATAAGGTAGCAAGAAGACTGTCTCTCCTTAGTCACCCAGAGTGCTCTACACTGAGTGGTGGGCAGGCCATCGAGCATATAGCTAAACAAGGTGACAGGTTGAAGTTTTCCTTGAAGTTGCCAATGGGTCAACACTCTGACTGCAACTTTTCCTTTTCTGGTCTTCGCACCCAGGTGATACATATAATTCACAAAAAAGAAGGGGAGGAAGGTATACCGATGGGTCAGCTGTTGTCTTGTGTTAATGACATTGCTGCTGCAGTGCAGTATACTGTGGCATCCCATATTGCAAAGCGCACACATCGTGCCATTCTGTTCTGTAAGGCAAAGGGACTATTGCCTCAAAATAGTGCAACTCTGGTTGTCTCAGGCGGAGTTGCAAGCAACCAGTATATCAGAAAGACTTTGAAGATTGTAACAGATTCAACAGACTTGACTTTGTTATGCCCACCTGCCAAGCTTTGCACAGACAACGGTGTCATGATTGCATGGAATGGAATTGAGAGACTCAGAGAAGGAAAAGGAATCCTGAATCATGTTGAAAACATCTGCTATGAGCCAAAGGCTGCCCTTGGGACTGACATCTCAGGACAAGTGAGGGAGGCAGCTATAAAGGTGCCACGACTCAAACTGGAGATAAAAGAATGAGGGGTTTCTTTGGTTTGGTTGTACTTTAACAAATCTAACTCAGCAGCAATGTATGGAATTGTATATACGATTCATTTTGTATATGAGTGTACCTATGTGAAATTTATAAACAGTTTTTCCCTAC

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01409 KAE1, tsaD, QRI7; N6-L-threonylcarbamoyladenine synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161353 lncRNA downstream 209629 15071918 ~ 15073870 (-) True G128703
TU161327 lncRNA downstream 326447 14956841 ~ 14957052 (-) True G128681
TU161320 lncRNA downstream 507860 14773562 ~ 14775639 (-) True G128676
TU161317 lncRNA downstream 507860 14773634 ~ 14775639 (-) False G128676
TU161264 lncRNA downstream 662574 14619572 ~ 14620925 (-) True G128631
TU161518 lncRNA upstream 69292 15364067 ~ 15433140 (-) False AMCG00001118
TU161528 lncRNA upstream 111993 15406768 ~ 15409154 (-) True G128839
TU161524 lncRNA upstream 114435 15409210 ~ 15413192 (-) False AMCG00001119
TU161525 lncRNA upstream 114435 15409210 ~ 15413192 (-) False AMCG00001119
TU161589 lncRNA upstream 167942 15462717 ~ 15463789 (-) True G128890
AMCG00001107 mRNA downstream 15298 15264674 ~ 15268201 (-) True AMCG00001107
AMCG00001104 mRNA downstream 31769 15241652 ~ 15251730 (-) True AMCG00001104
AMCG00001106 mRNA downstream 54637 15214305 ~ 15228862 (-) True AMCG00001106
AMCG00001105 mRNA downstream 74296 15206893 ~ 15209203 (-) True AMCG00001105
AMCG00001099 mRNA downstream 95993 15185112 ~ 15187506 (-) True AMCG00001099
AMCG00001110 mRNA upstream 43558 15338333 ~ 15342120 (-) True AMCG00001110
AMCG00001118 mRNA upstream 69992 15364767 ~ 15377934 (-) False AMCG00001118
AMCG00001119 mRNA upstream 114395 15409170 ~ 15432330 (-) True AMCG00001119
AMCG00001117 mRNA upstream 141179 15435954 ~ 15445927 (-) True AMCG00001117
AMCG00001115 mRNA upstream 151674 15446449 ~ 15460505 (-) True AMCG00001115
TU161398 other downstream 103177 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 684929 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 1923729 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 2531983 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 4583151 10697707 ~ 10700348 (-) False AMCG00000960
TU161519 other upstream 69292 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 265570 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 1878095 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3230117 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 3261055 18555830 ~ 18558217 (-) False AMCG00001196

Expression Profile