RNA id: AMCG00001115


Basic Information

Item Value
RNA id AMCG00001115
length 7877
RNA type mRNA
GC content 0.51
exon number 29
gene id AMCG00001115
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15446449 ~ 15460505 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTCCGTTCTTGTTTTTACACCCCTGTCTAGTGTTAAATCGGGATTAGGGAAAtgGTATGTTACAAACTGTACAAGCAGAGGATAAGGATCTGCTTCTGAACTGACTGCACCGGGTCAAAGCTTGTATTGCGAAGATAGTTTCTCCTGCCCGTTTTTCATCTTGGCTGACTCCTTCTAACAAGACAAAGTAGAAGTAGTTTACACCTTCATGGACTTATACATTTAGTTATATTAGCTTATTAGCATTAAGAAAGTTGCTGTGTGCTGGCAACATGAACCCACCCGGGCTGTTTGGGAGACAGCAAGGGGGTGCATTCCAGGCCCCCAGCAATACCAGTCGCAGTGGGGGGGTCTTTCATTGTTTTGGGCAGCAGAATACAGCAGGCACCACTCAGACCCCAGGGTTCGGACAGACCCCAGGATTTGGGCAGACTCCAGGATTCGGACAGACATCTGCCTTCACTCAACCAACAGGCTTTGGCCAGCCTTCGGCCTTTGGGCAGACTCCTGCATTTGGACAGACGTCTTCCCTTGGGCAGGGCTCTGTGTTTGGGCAAAACGGTGGACTGGGGCAGACATCCACAATGGGACAGCCTGCCACCTTCTCTGCAACAGGAGGGATGGACCAAACCCCCGCCTTTGGGCAGTCTTCACTTGGACAGAGCAATGCAGGGTTTAGTGCACCGCCATCTTACGCCCAAGCAACTGCAACAAGCCAGAGCTCCATGTTTGCACCGCCACCTGCCTATGGACAGAACACAGGACAGCAGTCGGCGGTGTTTGGGCAGTCTGGTTTTGGTCAGACATCTGGATTTCAGCAGACAACTGGGTTTGTCCAACCTTCTAGCATCTCGCAGTCCTCTTCAGCTCCTACATCTTCATCTGGGTCAGGACTTGGTTTTAACCAGGCAGCAGCCATTTTTAGCCAGCCTTCTATGTTTGGAATTCCCAGTGGAACACTTGGCTCTTCCTCAGGTAGTGCGAGTGTCACATTCACCAcgccttcctcctcctcatccatCGCCCCATTCTCATCTTCCTCGTCCTCTCTCTTCAAGAGCACCGACACAGGAAACCGTGGGTTTGCGAGGACAGATTTCAGCTTCAAGCCCTCGGATACAGCAGTTTTCAAACCCATCTTCAGTGTCAGCCCTGAACCAGCCAATCCCCAACCTGTATCAGCCCAAGGGTCTTTTAGTACTGTGCAGCCTTCTGCTAGTGTGGGAGCCAGTAGCAGTACAACTTCTGGTTTCTCGCTACTGACCAGCACTACCGGTGCAGGTTTAGAATTTAGCTTCTCCCAGCCAACAGCAACCCCTTCCATAATTAGCAACAATGCCAGCCTTCCCCAGAAAGAAGTTGCAATAAGCACAAACACCGGCAGCAGCAGCTTGGAATTTACTTTCTCTCAGCCAGCAGCTCCTTCCAACAGCAACAGCACCACTGGCACATCCACCTTTAGCTTTACAGAAAAGGTCCTTGGTCCTGCCACATCCCTTTTTGGAACAGGTGGGTTTGGCCCAACAACTTTTGGTGATCAGAGCGAAAGCATGAAGGCAGAAGCAGTGCAAGGAGGagaagagaaagggaaagacAAAGAGAGCACAGGGGATGTGCCTTTTGCCAGCCTTGGGAAAGGAACAAAACGGAAAGAGGAGCCTTTTGAACACATGACTGCACAAGGCAAGGCAGCCAAGGTGGAGGGCACCCAACCTGGCACTGACATCCCCCGGCACCAGTCTAAACGGCCCCTGACGAGACCACATGGACCAGTCAGCGGGCTCTTCCGCAATGCCCTCAGTGGTGTGTTGAAATCCACAGTGCAGCTTGTCAAGAAGGAACCCAAAAGGGAAGTCGAACAATTGCCAGATTGGGGAGAGGTGGAAAGGCCTGATCTAACTCCACAAGCCACTCATTCATCTTCCCGAGCCCCCACAGCACCCCCTAGAATGCACACCCCACCAAGAGAGGATAGTGCCAGTGAGAAGGCTGCAGAAGACTCTGAACCCAAGACTCCGGCGCGCCGAACACGGCGCAGAGAGAGCAGTGACAGCCTGGGGACTCTCTCGCCCACTGACGCCACCATCATCCAGTGCAAAAATATCCCACCAAACCTCAACAAAAAGGAAGTCATTGAGAAGCACTTCAGCCGCTTTGGCAAAGTGCGGAAGGTGTACTGCAGACCTGGAAAGAACCTTGCCATAGTGCATTTCAATGATCATGCATcagcattcaaagcaaagaagaAGGGAAAGTCTTTTCACAGGACAGAAATTGCTATATTTTGGCAAAGGAAGAAGACAAGTCCTgcagagaaggaggagagacCTTTAAAGGCAGAGGAAGCACAGAGAGATACTGAGTCTAGGCGCAGCAGCTTCCAGGCCTCCCCTCTCCGCAAGCCCATCGCTAGATCCCCCGCTGTTGGCAGCAGTGGCTCCCTCAGTAAAGGATCTCCGGTCAAGAAGTCTTTGATTGCCAAGTCGCTGCAGTTTGACACCGAGTCCCAGCATGATTCAGGCTCGGAGGGTCAGAGTTCAGATCGCCAGATGATCACCTTGCCCGCCTCCCTGAATCACCTGATCGGTCAGGTGGCAGAGACCTCAGAGGAGAAGTACCGCCTACTGGAGCAGAGGGACAAACTTTTGAGACAAGGAAGGGTCAAGAGGACAGACCTGGACTTATCCAAGGTGTTTGTGGGCACGTGCCCAGACATGTGTCCCGAGAAAGAACGCTACATGAGGGAGACTCGCAACCAGCTCAGCTCCTTTGAAGTCATCCCTGGCACAGAGCGGGTGGACCATGTGGTGGCCATTAAGGAGTACAGCCGGTCTTCTGCTGACCAGGAGGAGCCACTTCCCCACGAGCTGCGGCCCTCGTCTGTGCTCAGCATGACCATGGAGTACCTGGTCACGCAGATCATAGACCAGGGGGAGGGCAACTGCCGGGACTGGTATGACTTTGTCTGGAACAGAACACGAGGGATACGCAAGGATATCACCCAGCAGCACTTGTGTGACCCCTCCACTGTGGCCCTGATTGAGAAGTGTACTCGCTTCCACATCCACTGTGCTCACCACTTGTGTGAGGAGCCCATGATGTCCTTCGATGCCAAAATCAACAACGAGAACATGACCAAATGCCTGCAGAGCCTGAAGGAGATGTACCAAGACCTGGCAACCCGGAATGAGTTCTGCCCCAGGGAGCAGGAGTTCCGCCAGTACAGTGTGCTTCTCAAACTCAATGATGGGGACATCCTCAGGGAGGTGCAGCAGTTCCGACCAGAAGTCCGCAACTCCCCTGAGGTGAAGTTTGCAGTGCAAGTCTTTGCTGCTCTCAACAGCAATAACTTCGTCAGGTTCTTCAAGCTGGTCAGAGGGGCCTTCTACCTCACCAGCTGCATCTTGCATCGCTACTTCAACCAGGTGAGGCGTGATGCTCTGAAGGCCCTGAACATTGCCTACACGGTGGGCTCCCAGAGGCCCACCACCTTCCCCATCGAGGACCTGGTGAGGATGCTGATGTTCCGCGATGCTGACGAGGCGGGGAACTTTGTCATGCAGTATGGGCTGAATATCAATGAGGGCATGGTGGAGCTCAGCCGCTCGTCGTACCAGGAGCCCGATGTTCCAATTCCACCGAGGAGGTCCATGGACATCATGGGGAAAAGAACGGTACTGATTGGGGAGGTCGTCAATGGAGGTCCCTTGCCAAGCCCACCTCAGCACACACCAGTCTGCAGCTTCGATTCAAGGAACAGATACAGGGGTGAGGGTCCTGTGACTGACACGGCCACCGTTTTCCAGCGGGGCGGAACTCTCGGAGCAACAGTTCCGGGATTGGCACCAAAGCAGGAAATAAAGTCTTTAATGGATCTCAAACCCTTCATGGACTTGGATCTAAAGCAACCAATGAAACTCAAGCTCCAGGAGGAATCCAGACCATTTGTGGATCCCAATGCTATGTTGAAGCCACCAGTTGCAGAGGAGTCTGCAGGGCAAGCCGAGCTTGCCGCCCCCCCTGAAGTGCAACCACTGTTCCAGCTTGTCCAGCCTCAACCCATCCGGCCCCCATCCCCTCCTCCCAAACCGAGGCCCGTCTACACAGACCATGACATCATGGAGGAGGTTAACTCAGTGGTAGAGGATGTTTTGAATGCAGAGTGTACAGGCATGGCCAAAGCAGGCGCTGACTTCATATCCAATGCGCTCTGTGTCTCTGAGACCCAGGTGGACACAGTGGTGAGTGAGGTGGTGCAACAGATGGTGAAGGAGGTCTCCATTGCTGAGTTCAACGCAGAGAAGGAGAGAATTGCAGAAGAAAAGTGCAGGATTAAAGAAGCCAGGAGGAAACAGGAACATGAGCTGTTCATTTCCCAGTTCAGCAAATCCCTCTGCTCAGAGATTACAAAGGAGGTCTTGAAAGAGTGCATTAAGGACACTGCTGCTTCTGAAATGCAACATGCACTGGAAGACAAGGCAGCATGTATCGCTCGCTGCTCAGAGGAAGAGTGTAACCGCTTAATGGAGGAGACCTTAGAAAATGCAATCTTCCAGCTTGCCAAAGACACCCTGGAAGTGGAGGTGCTGCGCTTCCGCAAGTTTGTGAAAAGGTGGCGTGACGTTGTGGCGGTACGCAGGCAACTGAAGAGACAGATGCGTGCGTTCCCAGCGGGGCCCTGCTGCGTCGACCCGCGCTTCAAGCTGAAGGCCCTGGCGCCCAGTGCCCCTTCCCCCCTCCGGCCGGACTTGCTGGCCCAGGGAGTGGTCAACCTGGGAAATGCTGGCAACGTCGCTGTGTCCTGTACAAGaTTATTGCAGATGAGAAACGAGGCAATCCATCAGATGAAGGTGCAGTTTTATTATCAGCATTTACTGAGGGAGTCGGTGTGGAAACCTCTAGACCTGCCTAGCTTGGTGTCAGAAAGTGTTCCGAACCCAAGAAACAGAATCTTCTGGAAAGCTGTCCTCCTGCTGCCAAGCAACCAAGAGTGTGAAATGAGTGTCACTAATAGGATTTTAACTGAATGGCTGCGTGCAAAGTTTAGTGAGGAGGAAGATAGAGAGCAGGATGCAGATGACAAAATGCAGACTCTTTCGATCTCCAATGGTGTCCGAAACCATGGAGAGCGGTCTTCCAAAGTTCACGTCTGCATTAAGGTGACCCATGGGCCCCTGAGTCCTGAGGGCCAGGCTCAAATGGAGAAGCAGAAAGACCTGCTGGGCACGAGCGCCCTCATGATGCTGCTGCCGTCCCTGCCGGGCTCTGGCGTCTCGGTTGCAGAGGAGACGGAGGAAATGGACGTGTATCTGCTCTCTGCCCTCTTGCAGCTCAGACAGATCCAACAGGCCAATTCCTGGCAGCCTGCACTGCCTCTAGTGGTGGTGGTGCCCAAACCGACAGAGCAGCCTCGGAGTGAGGAGAGGCTGGAGGAAGCTTTAATGCTCCAGACTTTGGTTGACGATGGTTTAATTTCGGAATACATATTTGTGCACATCCCAGAGACAACCAACGATTTACAAGGCTCCAAGCAGATTTGCCAGGGAGTGAAGTGGCTGGCTTCCCGTGCTCCTGCTCCCGTCGAGTTGGGCTCCAAGACACTCATTCAGTTTGTGGAGGACAGTCTGTGCCGGGAGTTCAGTGCCAGGTTTTACCAcgataagagagagagacaggcctCGGGGCTGCCCTGCCAGGAGCCTTCCCCCATCATCGGGCTCTACAACAGTGTGCTCCGCTTCCTCGCCGGCCAGGTGTCCTCGGAGCATCTCTCTAGCCTCTCTTGGCCCGTGCCGGAGTTTGCGCTGCCGGGCACCAGGGACCTACTCCCTCACCTGGAGTGGAACTCACCTGAGCACCTGGCCTGGCTGGGCAGAGCCATTCACAGCCTGCAGATACCCGATTGGGACCTGCCCCAACAAAATGCCTCCTGGCCCCAGCTTCATACCAGCATTTCCCAGTATGTCTCCCAGATCCCGTCCTCTCGCCACTCCCAGTTCCTCCTCACATCCAAGGTGAATCACCTGCTGAAGAGAGTGTGCTCTCAGTGGAGCTCCAGCATCGCCACAGGtctggaggaagaagaggacgATAGGGATTGGCCTTCTTTCTATCAGGTGCCCTGGGATGAGATTGTGGCATTATGCATAGACCACCGCCTGAAGGACTGGAAGCCCCCAGGATCACCTGTGACAAAAGGAGCCATTATGGAGGATGGGGAGATTTTGGTGTATTTTGAGAAGGATGGTCTCAAAAAGTACGAGCCTCCTGTGAGCTGGGATCAGGCAGTGCAGAAAACGCACAAAGACAAGAAGCAAGAGCCAGCAGGGGGCAAGCTGAACATCAGCCAGGCAACCACCCCACACCAGCTACAGTTCAGAGAGAGATTGTTCCACACCTCTGAGGAGAAACCTGAAAACCCCACTGTCGCTGACATCACACACAAGCCCTCCCCCCAGGAGCTCCTGCCACAACGCCTCCTGAGCAGCATCCAGCAAGAGAGAGCCCAGAGCCAGAGGTTTGAGGAGCAGTTGCGTCAGTGGCTTGAGGTGGACCCTATGGATACCTTCTCAATGCCTCTCTTCATGCCCTCAACACTGATCTCTGTACCTGAGATCATGGTACCCAGCCTCAGAGCTTCTCCTGCAGCCACTGCTGCTACACCGAAGCCGGGTGCTGCTCTCCGTGCAGACAAGGACGAGTGTGCATGGCAGAGACAGGCGCCCACGTCGGTGGCGCAGCGCCTGCGGGATCTGGACAGTCTCATCAGAGCCAGCAGGGAGGAGGACTCGGCCTGTGGGCTGCAGCTCAGAAACCTCCTGGACATCGTTGAGGACTGAAAGCGCTACTGCAGGGCCTCAGGCTCATGCTGGGACGAttgtttggaaaaaaatgtttaaaagctttGACAGAAAATGCCTTATTGTGCGTGtttattcacaaataaatacctgtaaataatataaatattatgcaTCCTATTTTAGATCCGTTTGATAAAATCCTGTTCTATAGCAGTGCAATTCTGGTGTGTTAAATTCTGACATGATTTCATGTCTTTCGCAGTTTCAAAATCTAACCTAAAAGGATGCAGGTCTTAAATGAGTGCTGTGGactgtgcttgttttgtttgtttttttacacgtTCTTGATTAACAGTATTGTAGTTcatactttttattgtatttgttgctGTATTTCCTCAACAACAGGAGTTGTTCTGTATCCAACTTAAAAAGACAATGTGACTTGGTCATGGTCTTTGAAACTGAAGTGCCACTGTACCACATTGGATTATGCATCAGAAAGCAAATTTAAAGAAGCAACAATATTATAACTCCAGTctttaaattaagtgtttatgctgaatttatttttcagaaatgagAGGGAATGAATATTCTTTACAAATCTCTGATAAATCTCCCACAATGTATCGGTTCTTAAGGAATTCATTCATTGTGTTTCCTTCAGTTGTCAGGGATTCCCATATCAATTTGGGAGGATcgcctgtcctgctggtttttgtttcaactaagatctcaattgcttaattgaactaacaatatAAGGCTCGATGTCattaagagcttggttggaacaaaaacctgcacGGCAGGGAGTCCTTCAGGACCGCTTTGGGAAtccttgttttaaatactttaactGATTATTCAGTTATAATAGTTTATCCAGTTCCAGAGACTCttggtatattttatattgacattaatattttactgcAAAACTGGATTTAACTCCATGTAGGACAGTAGGTGTTAAATTATATCCTACCTCTCTAAATATAAaagtttttgtgttgtttgttttgcttattattgtttggttgtttttgtgctAAATCTTATGCCTTCA

Function

GO: NA

KEGG:

id description
K24317 MCM3AP; germinal-center associated nuclear protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161518 lncRNA downstream 13309 15364067 ~ 15433140 (-) False AMCG00001118
TU161524 lncRNA downstream 33257 15409210 ~ 15413192 (-) False AMCG00001119
TU161525 lncRNA downstream 33257 15409210 ~ 15413192 (-) False AMCG00001119
TU161528 lncRNA downstream 37295 15406768 ~ 15409154 (-) True G128839
TU161353 lncRNA downstream 372579 15071918 ~ 15073870 (-) True G128703
TU161589 lncRNA upstream 2212 15462717 ~ 15463789 (-) True G128890
TU161602 lncRNA upstream 59111 15519616 ~ 15559349 (-) True AMCG00001127
TU161603 lncRNA upstream 93781 15554286 ~ 15559349 (-) False AMCG00001127
TU161707 lncRNA upstream 563653 16024158 ~ 16027580 (-) True G128976
TU161795 lncRNA upstream 892930 16353435 ~ 16378315 (-) True G129033
AMCG00001117 mRNA downstream 522 15435954 ~ 15445927 (-) True AMCG00001117
AMCG00001119 mRNA downstream 14119 15409170 ~ 15432330 (-) True AMCG00001119
AMCG00001118 mRNA downstream 68515 15364767 ~ 15377934 (-) False AMCG00001118
AMCG00001110 mRNA downstream 104329 15338333 ~ 15342120 (-) True AMCG00001110
AMCG00001111 mRNA downstream 151674 15283499 ~ 15294775 (-) True AMCG00001111
AMCG00001116 mRNA upstream 3383 15463888 ~ 15474968 (-) True AMCG00001116
AMCG00001124 mRNA upstream 41311 15501816 ~ 15511478 (-) True AMCG00001124
AMCG00001126 mRNA upstream 69603 15530108 ~ 15546624 (-) True AMCG00001126
AMCG00001127 mRNA upstream 97454 15557959 ~ 15567260 (-) False AMCG00001127
AMCG00001133 mRNA upstream 451577 15912082 ~ 15913139 (-) True AMCG00001133
TU161519 other downstream 12980 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 266127 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 847879 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 2086679 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 2694933 12732184 ~ 12751516 (-) True G128160
TU161636 other upstream 99840 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 1712365 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3064387 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 3095325 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 3428260 18888765 ~ 18889757 (-) True G129566

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073468 False 9091 mRNA 0.44 30 NC_007120.7 38458193 ~ 38483789 (+)
grasscarp (Ctenopharyngodon idella) CI01000009_10361969_10374788.mRNA True 7114 mRNA 0.48 30 CI01000009 10361969 ~ 10375458 (+)