RNA id: AMCG00001116


Basic Information

Item Value
RNA id AMCG00001116
length 3515
RNA type mRNA
GC content 0.50
exon number 24
gene id AMCG00001116
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15463888 ~ 15474968 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGGATGTCGCGATACTCTGGCGTGTGTTCTCGGACCGCTCTTCCGCTGTTGATTTTCACATTCCCGCCATCATTCCGTGCCGCTGGGCTCCGTCTCCGACCACTGTCAACAATAACAACACGGCGGCCAGCGCAGGGCCGGCGAAACTACAGAGAGCCCGCCGAAGACGAGAGGAGAATTCACTCGGAAAAACGTGAAAACGTGGAAAAGCAAACGCTACGGCAACTTTCATTTGGAAGTTTTGTGTAAAGCTGTCCAAAGCACCGGGGGTGACCTCCTGCAGTTGAAGCTCTGACCCAGAGACCAAGTGCCTGTTGTGCGTTTCAGCCATGGCAgcaacagtgccaaaactcttGGGTAATGTGCGCATCAATAGTCTGCAGCTTGGCACCACAAAGTGGAGAGAGGGAAGCTTTGAGATCCACGAGAAGGACAGCAAAGTCAACCTCTTTGTGAGGTTCAACAGTGGAGGGGTACCCAAAGTATTTCAGCTCAACCAGAATGTGAAGAATGTGTCTTTGGGTCCTAAACAGAATCAATGTCGAATCCAAGTGACCCTGAAAGACTCGAGCAACATAACAATTGACAAAGTACCCTTGTTATTGGCCCAAAAATTCAGAGACTATCTGGAGAAACTGAAGCAGGGGAAACAGAcagttTTAAAGCCATCCCAGGGAACAGTAAGTTTTGGCAGTGTACTGGGGAACCGATCATTACAGAATGACACCAGCCTTCCCAGCATAGAGAGACAGACTCCTCCCAGGCGAGCAAGTTTGGACAGCAGAGAGGAGACCACCGTGCGGAAGCCCCTCGGCAGCCCAAGTCGTGGGAGCTCGACTCCAGCCCGCAGTGGACTCTCGGAAAACAGGAACGAGAAGAGGAAGAGGCTCCTGACTCCCGAGAGTGATCTGAATGAGGACTACCCTAAGGAGAATGACTCCTCCAGcAACAACAAGGCCACATCTGACCCTTCTCGGAAGTTTTTGATTAGCTGCAAAGAGAAGCTCACTATGAAACAGGCTGAGGAGAACAGGAGCTCAGGTCCAGCGCCATTGCAGCCTTCGTCTTTCTATGGTAGCAGATCTATGACTAAAGACTACTCACAGGGAAATTATTTCCCTGACCGgCCGAGCAGCACAACTCAGTCCCCCTCATCAAAAAGGAGCCTCTTCCCCAGTCATTCAACTCCCTTTAAAAAGGTGCGGCCTAACTTGGATTACACTGGCTGGAACAAGCCAAGGCTGTCCTCTCTCACCCAGCCTCCGCCTCAGTTACAGGGATTCTCCAACTTGGGAAATACCTGTTACATGAATGCCATCCTACAGTCGCTCTTCAGTCTGCAATCATTCTCCAATGACCTGCTGAGGCAGGGGATCCCCTGGAAGAAAGTCCCTATTAATGCACTACTCAGGCGTTTTGCGCACCTGCTGGCTAAGAAAGACATTTGCAGCCCTGAGGTTAAGAAGGACCTGCTGAAGAAAGTTAAGAGCTCCATCTCCACCACCGCAGAGAGGTTCTCAGGATACATGCAGAATGATGCCCATGAGTTCCTCAGTCAGTGCCTAGACCAGCTGAAAGAGGATGTGGAAAAGGTGAATAAAAGCTGGAAAAACGAGCCTCAGTCTTGGGAGGAACCTCAGGGGACGCGACCAGGGGAAGAAGCCTTATCTTCTCGAATTTACACTTGCCCAGTGGTGCTCAACATGGAATTTGAGGTTCAACACACTATCACTTGCAAAGGTTGTGGGGAGATTGTCACGAAGCGAGAGCAGTTTAATGACCTGTCTATTGATCTGCCACGGAGAAAACAAACCCTTCCTTTGCGTTCCATACAAGACTCCTTGGATCTCTTCTTTAGGatgGAGGAGATTGAGTATTCCTGTGAGAAATGCAGTGGAAAGTGTGCAACAGTTACACACAAATTTAGCAAACTCCCCAGGGTGTTAATCCTTCATTTAAAAAGGTACAGTTACAATGCCCAGCTGTCACTCAACAGCAAGCTGGGGCAGCAGGTCTTGATCCCTAAATACCTCACTTTGCTCTCTCATTGCACTGATGCCATGCGGCCCCCCCTTGGTCTCGGCTGCAATGCCAATACAGCCATGTCTCGGACACTAAAGACTTCCCAGTCTGTGAACTCCTCAACTGCTGCCTCCTCTGCAGCATTACGGAAAGGCAGCCTTAAACCTGGGAACTCCGCTGTGACCATCATAGACTCCGACAGTGAAGAGGAGCTCACCAGGAAGATTGTCTGTCGTAGTCGTAGGCTGAGTGAGACCCTGCAAGAAGACGACAGGATGGAGAAGCCCCTCCGCAGCCAGGTGGAGCACCCTGAGGCCAGCTACGATGGGATGAACGATGAAGAGATGTTGGCAGCAGTGCTCGAGATCAGCCGCCAGGACCACGCCCTTCCAGGATCCCCTGAGGATGAGCCCACCAGCAGCCCAGACACAGGCTTCGGAGACGGCGACGGGCCAGACTTGGCTCATCACGCTGATCTCTTTGAAACGGACAAACCTACGTCATCAGATGTCTTAGATTCGCTGGCCCTGACCAAAGACCTGGATGAGAACAAGGAGAACCAGACCCCAGAGGAGGCGCAGGGAGAGCTGGACTGGGTGCAGCAGTACAGCCTGGAGCAGGAGCGCGAGGAGCAGGAACTGCAGCAGGCATTGGCTCAGAGTTTGCAAGAACATgaagCTCGAGAAATGAAAGAGGATGATGACCTTAAAAGAGCCACTGAGCTAAGCCTGCAAGAGTTCAACAGCTCTTTGCCGGACTGCCTGTGCTCGGACGAGGACTCTGGCACTGAGGATGTCCTGGACATGGAATACAGCGAGACTGAGGCTGAGGATCTGAAGAGGAACGCTGAGAGTGGGGAACTGGCCAACTCTTACAGACTCGTCAGTGTGGTCAGTCACATCGGCAGCAGCTCGTCGTCTGGCCACTATATCAGTGATGTTTATGACATTAAGAAGCAGTCTTGGTTGACTTACAACGACCTTGATGTGTCTCGGACTCAAGAATCTGCAGTACAGAGAGATCGGGATAGAAGTGGATACATATTCTTCTACATGCACAAGGATATATTTGAGGAGCTTGTGGAAGTCGAGAAGTCGAGTGGGAGTAGTGAAGTTGGCAGGTCTGTTCTTCAGCCCCTCTGAGAAAACAAGGGAACCTCACAAAGCCTTTGATGCTTAAGGGGATGGAGTTTGAATTGAGAGAAGGATTAGTAAAGTGGAACAACTTTCCAGTACTACTGACCACCGTCCACCTTCCCTCACTGAAGCACTTTTTAAAGTGACACTTGCTAACATTACCACAGCAGGCTGGCTTTCAGCACTGTGAAATCTGTTGCTAGCATTTTGTCTTGAACCCTCAGAGAAACCTTAAGAACTtatgaaatgtaagaaaaaactaaatagagTGTATTTTTGAAGTGTTTCTGTGATTTATCCTGGATCAAATTTTGCTAGGAACTTACAGgcacatcccccccccccccaccccacc

Function

GO: NA

KEGG:

id description
K11850 USP26_29_37; ubiquitin carboxyl-terminal hydrolase 26/29/37

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161589 lncRNA downstream 99 15462717 ~ 15463789 (-) True G128890
TU161518 lncRNA downstream 30748 15364067 ~ 15433140 (-) False AMCG00001118
TU161524 lncRNA downstream 50696 15409210 ~ 15413192 (-) False AMCG00001119
TU161525 lncRNA downstream 50696 15409210 ~ 15413192 (-) False AMCG00001119
TU161528 lncRNA downstream 54734 15406768 ~ 15409154 (-) True G128839
TU161602 lncRNA upstream 44648 15519616 ~ 15559349 (-) True AMCG00001127
TU161603 lncRNA upstream 79318 15554286 ~ 15559349 (-) False AMCG00001127
TU161707 lncRNA upstream 549190 16024158 ~ 16027580 (-) True G128976
TU161795 lncRNA upstream 878467 16353435 ~ 16378315 (-) True G129033
TU161811 lncRNA upstream 1045213 16520181 ~ 16574599 (-) False G129042
AMCG00001115 mRNA downstream 3383 15446449 ~ 15460505 (-) True AMCG00001115
AMCG00001117 mRNA downstream 17961 15435954 ~ 15445927 (-) True AMCG00001117
AMCG00001119 mRNA downstream 31558 15409170 ~ 15432330 (-) True AMCG00001119
AMCG00001118 mRNA downstream 85954 15364767 ~ 15377934 (-) False AMCG00001118
AMCG00001110 mRNA downstream 121768 15338333 ~ 15342120 (-) True AMCG00001110
AMCG00001124 mRNA upstream 26848 15501816 ~ 15511478 (-) True AMCG00001124
AMCG00001126 mRNA upstream 55140 15530108 ~ 15546624 (-) True AMCG00001126
AMCG00001127 mRNA upstream 82991 15557959 ~ 15567260 (-) False AMCG00001127
AMCG00001133 mRNA upstream 437114 15912082 ~ 15913139 (-) True AMCG00001133
AMCG00001132 mRNA upstream 441223 15916191 ~ 15917611 (-) True AMCG00001132
TU161519 other downstream 30419 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 283566 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 865318 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 2104118 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 2712372 12732184 ~ 12751516 (-) True G128160
TU161636 other upstream 85377 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 1697902 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3049924 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 3080862 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 3413797 18888765 ~ 18889757 (-) True G129566

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073765 False 7659 mRNA 0.48 24 NC_007120.7 711638 ~ 746317 (-)
grasscarp (Ctenopharyngodon idella) CI01000353_01157283_01179497.mRNA True 3239 mRNA 0.51 22 CI01000353 1156898 ~ 1179497 (-)