RNA id: AMCG00001117


Basic Information

Item Value
RNA id AMCG00001117
length 2676
RNA type mRNA
GC content 0.50
exon number 21
gene id AMCG00001117
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15435954 ~ 15445927 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTGACGGGACCAAAAATGCACCCAAAGATCATCTCAGTGACTTGTTAAACAGGTGTCTGCGTAGAAGGGGAGGCCCACACAGAAGCGAGCCGGCCACGGACCTGAGGCGCTGGCGACTGTCTAACGTTGAGGGCCGCCAGAGCTGGAGCTATGTGGAGGACCAGGACACGGCTGACCGGGAACAGACCATGCTGGAGGCTTACTCTCTGGGCCTGGACACAAGCAAGTTCATCCCCAACTCTCCTCCAGCCAGCACAGCCAGGCAGGCCGCCCTGAAGGGGATGCAGTTCTACCAGCTGCTGCAGGCCGAAGACGGTCACTGGGCCGGGGACTATGGGGGACCTCTCTTCCTGCTGCCAGGCCTCCTGATCACGTGTCATGTGGCTGGCATTCCCTTGGCCGAGGCCTGGCGCAGGGAGATGGTGCGGTACCTGCGCTCAGTGCAGCTGCCTGATGGGGGTTGGGGCCTGCACATTGAAGACAAGTCAACGGTCTTTGGCACATCCTTGAGCTACACCACACTGAGGATCCTGGGAGTGGGGCCCGATGACCCTGACATGGTGCGGGCCAGAAACAACCTGCACGgcaaagGAGGTGCGGTTGGAATTCCTTCATGGGGCAAATTTTGGTTGGCTATCCTGAATGTGTACAGCTGGGAAGGCCTGAATACCCTCCTCCCAGAAATGTGgttATTTCCTACCTGGATGCCGGCTCATCCGTCCACCCTATGGTGTCACTGCCGCCAGGTCTACCTGCCCATGAGTTACTGCTATGCCGTGCGCCTCACAGCCAAGGAGGACTCCCTCGTATGCAGTCTCAGGCAGgAGCTGTATGTCCAAGATTATTCCTCAATTGACTGGCCAGCTCAGAGGAATAATGTGGCGGCTTGTGACCTGTACACCCCTCACAGCAAGCTGCTCACCATTGCTTACGTAATCATGAACGTGTACGAAGCACACCACAGCACGTCTCTGAGGAAGAAAGCAGTTGAGGAGCTGTACGACCACATCAAGGCGGACGACCGCTTCACCAAGTGTATCAGCATCGGCCCAATCTCTAAGACCATTAACATGCTGGTGCGCTGGTATGCAGATGGGCCATCATCCCTTGCCTTTCAGGAGCATGTGTCCAGAATCCCTGACTACCTGTGGCTGGGCCTTGATGGCTTGAAAATGCAGGCAGATGCCCAGGACAGGCCCGAGCTGACAGCATGCCTCCAACATGCCCATGAATTCTTCAATATCACACAGATACCAGAAAATCCCCCAGACTATGAAAAATACTACCGCCAAATGAACAAGGGCGGATTTCCATTCAGCACTCGAGACTGTGGCTGGATTGTGGCAGACTGTACCGCAGAAGGCCTGAAGTCGGTGATGCTGCTGCAGGAGAAGTGTCCTTTTATAACTCAGCATATACCCAAGGAGCGCCTCTTTGATGCTGTCAATGTGCTCCTGAGCATGAGAAACCCTGATGGTGGGTTTGCCACCTATGAGACAAAACGTGGGGGAAGACTGCTAGAGCTCCTTAACCCTTCTGAGGTGTTTGGTGACATAATGATAGACTACACATACGTGGAGTGTACCTCGGCAGTGATGCAAGGGCTGAAACACTTTCACAAGATATTCCCCGAACACAGAACCGAGGAAGTCAGGTCTACACTACAGCAAGGCCTAGAATACTGCAGGCGGATTCAGAGGCCTGATGGATCATGGGAAGGATGCTGGGGAGTGTGCTTCACATATGGAGTGTGGTTTGGATTGGAAGCGTTTGCCTGTATGGGTCACACCTTCAACAATGGCGTGGTGCGCAGCGAAGTGCAGAGGGCCTGCGACTTCCTGTTGTCGAAGCAGATGCAGGACGGAGGCTGGGGGGAGGACTTTGAGTCATATCCAGATGACAGAGTGATAGAAAGAGGGATACAGATGCTAATTAACAGACAGTTGTCCAATGGGGACTGGCCACAGgAGAACATTGCTGGCGTGTTTAACAAGAGCTGTGCCATCAGCTACACCTGCTATCGAAATGTCTTTCCCATCTGGACCCTGGGACGTTTCAATCGCTTGTATCCTGCAAGTGCCCTGGCTGGGAAACTCAAACTGTGAACAGAGTGGAGAGCTAAGGGGGTGAACACTACTGTCTACTGCCTATTCATTGCCCACAAAGACTAAACTCACAAATGCTTGCGGGTGTCATAAGATGGCTGCTCCCTGCTGCTGTTTTTAGATGTTCAACGATTACCTTAACTTCCTTAACTTGCTTACCTCCACTTACAAGTCTTGGCAAAATGCTATCTTCCCAGAACATTCAATTGTAGAGAGCCTGGCCCATTTATATAATTGTCACTTTGCACATGACCCTATGGACATACCAGATACTTCAATTACATAAGGAGGCCTTCTCAATCAATTATTTCCACACTAGTCATTACTAAATGAACTGGAAGATAAACCAGCAGCAATGTGAACAAAGCACATTTCAAGTTAATTTGCTGCTTTTTCAACAATATGCCTTTACTACTGTTGTTAAAAGAGTATTATGGAATTTTATATATTATGCAATGTATcgtaataatgaatatataagaTATCTGTGTTTTTAGAACTTTGTAATTGTACTGAAACTATTGAATTGTATATGCAactgttatttcttattaaattaatcCAAAA

Function

GO:

id name namespace
GO:0016866 intramolecular transferase activity molecular_function

KEGG:

id description
K01852 LSS, ERG7; lanosterol synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161518 lncRNA downstream 2814 15364067 ~ 15433140 (-) False AMCG00001118
TU161524 lncRNA downstream 22762 15409210 ~ 15413192 (-) False AMCG00001119
TU161525 lncRNA downstream 22762 15409210 ~ 15413192 (-) False AMCG00001119
TU161528 lncRNA downstream 26800 15406768 ~ 15409154 (-) True G128839
TU161353 lncRNA downstream 362084 15071918 ~ 15073870 (-) True G128703
TU161589 lncRNA upstream 16790 15462717 ~ 15463789 (-) True G128890
TU161602 lncRNA upstream 73689 15519616 ~ 15559349 (-) True AMCG00001127
TU161603 lncRNA upstream 108359 15554286 ~ 15559349 (-) False AMCG00001127
TU161707 lncRNA upstream 578231 16024158 ~ 16027580 (-) True G128976
TU161795 lncRNA upstream 907508 16353435 ~ 16378315 (-) True G129033
AMCG00001119 mRNA downstream 3624 15409170 ~ 15432330 (-) True AMCG00001119
AMCG00001118 mRNA downstream 58020 15364767 ~ 15377934 (-) False AMCG00001118
AMCG00001110 mRNA downstream 93834 15338333 ~ 15342120 (-) True AMCG00001110
AMCG00001111 mRNA downstream 141179 15283499 ~ 15294775 (-) True AMCG00001111
AMCG00001107 mRNA downstream 167753 15264674 ~ 15268201 (-) True AMCG00001107
AMCG00001115 mRNA upstream 522 15446449 ~ 15460505 (-) True AMCG00001115
AMCG00001116 mRNA upstream 17961 15463888 ~ 15474968 (-) True AMCG00001116
AMCG00001124 mRNA upstream 55889 15501816 ~ 15511478 (-) True AMCG00001124
AMCG00001126 mRNA upstream 84181 15530108 ~ 15546624 (-) True AMCG00001126
AMCG00001127 mRNA upstream 112032 15557959 ~ 15567260 (-) False AMCG00001127
TU161519 other downstream 2485 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 255632 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 837384 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 2076184 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 2684438 12732184 ~ 12751516 (-) True G128160
TU161636 other upstream 114418 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 1726943 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3078965 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 3109903 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 3442838 18888765 ~ 18889757 (-) True G129566

Expression Profile