RNA id: AMCG00001118


Basic Information

Item Value
RNA id AMCG00001118
length 555
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00001118
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15364067 ~ 15433469 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gGTGTCGGACTGTCGGTCCATGGACGCTTCAGAGTGGCTACTGAAAAGACTGTGTTTGCAATGCCAGAGACTGCAATAGGCCTCTTTCCTGATGTTGGAGGAGGTTACTTCCTTCCCAGACTGCAGGGCAAACTTGGACTCTTCCTTGCCCTGACTGGTTTTCGCCTCAAAGGAAGGGATGTTCAAAGAGCTGGGGTCGCCAGTCACTTCGTAGAGTCCCAGAAGTTACCCGCGCTGGAGAATGATTTGGTGGTACTGAAGTCTCCATCTGCTGAAGATGTTGCAGGTGTATTAAGTTCTTATCAGACGCAGAGCAGTCTTGATGAAGAGAAGCCCTTTGTCCTCTCGGAGCACATGGATAAAATCAATAGaCTCTTTGAAGCGAGCAGTGTAGAGGAAATAAAGCTGAAACTGAAGCAGGATGGCTCTTCATTTGCACTGAAGCAGCTCGAGGACCAGAACCCAAAGTGGAAGCCATCTGTGTTGGAGGAAGTGACTGACGAATTTCTGGATGGTTGTTTCAAGTCGTTAGGAGACCATGACCTCCGGCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161353 lncRNA downstream 290897 15071918 ~ 15073870 (-) True G128703
TU161327 lncRNA downstream 407715 14956841 ~ 14957052 (-) True G128681
TU161320 lncRNA downstream 589128 14773562 ~ 14775639 (-) True G128676
TU161317 lncRNA downstream 589128 14773634 ~ 14775639 (-) False G128676
TU161264 lncRNA downstream 743842 14619572 ~ 14620925 (-) True G128631
TU161528 lncRNA upstream 28834 15406768 ~ 15409154 (-) True G128839
TU161524 lncRNA upstream 31276 15409210 ~ 15413192 (-) False AMCG00001119
TU161525 lncRNA upstream 31276 15409210 ~ 15413192 (-) False AMCG00001119
TU161589 lncRNA upstream 84783 15462717 ~ 15463789 (-) True G128890
TU161602 lncRNA upstream 141682 15519616 ~ 15559349 (-) True AMCG00001127
AMCG00001110 mRNA downstream 22647 15338333 ~ 15342120 (-) True AMCG00001110
AMCG00001111 mRNA downstream 69992 15283499 ~ 15294775 (-) True AMCG00001111
AMCG00001107 mRNA downstream 96566 15264674 ~ 15268201 (-) True AMCG00001107
AMCG00001104 mRNA downstream 113037 15241652 ~ 15251730 (-) True AMCG00001104
AMCG00001106 mRNA downstream 135905 15214305 ~ 15228862 (-) True AMCG00001106
AMCG00001119 mRNA upstream 31236 15409170 ~ 15432330 (-) True AMCG00001119
AMCG00001117 mRNA upstream 58020 15435954 ~ 15445927 (-) True AMCG00001117
AMCG00001115 mRNA upstream 68515 15446449 ~ 15460505 (-) True AMCG00001115
AMCG00001116 mRNA upstream 85954 15463888 ~ 15474968 (-) True AMCG00001116
AMCG00001124 mRNA upstream 123882 15501816 ~ 15511478 (-) True AMCG00001124
TU161398 other downstream 184445 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 766197 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 2004997 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 2613251 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 4664419 10697707 ~ 10700348 (-) False AMCG00000960
TU161636 other upstream 182411 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 1794936 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3146958 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 3177896 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 3510831 18888765 ~ 18889757 (-) True G129566

Expression Profile