RNA id: TU161524


Basic Information

Item Value
RNA id TU161524
length 1221
lncRNA type sense_over
GC content 0.37
exon number 4
gene id AMCG00001119
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15409170 ~ 15432330 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGAGCGGCAGGTTCTTCAGCAGTGAGCACTGATAGCTGATTATCAACCACCAgtaaaataattcaaaatgtggGGCCACCATTCAGGACACCACCATCAATCTGGCTTGCCCCAGATCCCTCAGGGCTATTTCATAGGGCCAGATGGATGTCTCCAGCCTTATGCCCTTGGCCAACCTGGATATTACCAGCCATTTCCCAATCAGCCTTTTATTGGGCAAAATTATGGATATGGCCATGGTCACAACATGTATGAGCACCATGGCCACCACGGGCACCACGGGCACCACGAGCATCACGGGCACCATGGGCACCATGGGCACCACGGGCACCATGGGCACCACTGAGGGCTCTGATTATACAGCCATGTTCTGCAGATGCCTAAATGAGGTGCTCTTCTGAAGAACAGGACAAGCCACTCAATTACCTTTGGGTTTTTCGGGTTTTGGGGTTTTGGTTTTCTGAAAGgattttaatatacttttttatatgtaaaagtgttttttgttctattttttacCTGCACTCTactcaatatgtattttaaaaatattcccatcattagaaattaattaaatatattaatattgtgatataaatataaatgttgcttCCATTTTTCTTGCATATTATGAGTGATTTGCAAAAGGTGTTTCTAAAACCTGCATATTCCCGTAATGTTGCAGAGTCATATACTGTTTTTACTtctttcagaatgtatttttcatgtattcagTATTTCTCTTTTAACTCTGATAAAGGGAAGTTAAAAGTTAGAAGttagaaattaaaatggtaacACTAGGTATTTATAACAGTTAAGAAAACACGTATTTCACCTTGGGGGTTATATTGTGGGTGTTTACTCATTATTTCatctgttaattaaaatataactttgtCAAGTtattaaaatttacattttcaaactgcaATTAATGTCTTATTTCTTAAATCTGAAATACATCACTGTGGTGACAGTTTAAAGTTCACAGCTgggaaagaaaagcaagagaCCTAGCATACAGTATTTCAGTAACATTtagtttactgtattattttaggTTCTACACTTTGCAGAATACAATCGATGAgtctggagtttttttttaagtaaaactaATTTCAGTAGCAGATCTTTTCAGACCTGGCTGATtctgtgtatttcattttctgttttggttctaatgtatattttctacAACATCCAGCTTCTAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161528 lncRNA downstream 56 15406768 ~ 15409154 (-) True G128839
TU161353 lncRNA downstream 335340 15071918 ~ 15073870 (-) True G128703
TU161327 lncRNA downstream 452158 14956841 ~ 14957052 (-) True G128681
TU161320 lncRNA downstream 633571 14773562 ~ 14775639 (-) True G128676
TU161317 lncRNA downstream 633571 14773634 ~ 14775639 (-) False G128676
TU161589 lncRNA upstream 49525 15462717 ~ 15463789 (-) True G128890
TU161602 lncRNA upstream 106424 15519616 ~ 15559349 (-) True AMCG00001127
TU161603 lncRNA upstream 141094 15554286 ~ 15559349 (-) False AMCG00001127
TU161707 lncRNA upstream 610966 16024158 ~ 16027580 (-) True G128976
TU161795 lncRNA upstream 940243 16353435 ~ 16378315 (-) True G129033
AMCG00001118 mRNA downstream 31276 15364767 ~ 15377934 (-) False AMCG00001118
AMCG00001110 mRNA downstream 67090 15338333 ~ 15342120 (-) True AMCG00001110
AMCG00001111 mRNA downstream 114435 15283499 ~ 15294775 (-) True AMCG00001111
AMCG00001107 mRNA downstream 141009 15264674 ~ 15268201 (-) True AMCG00001107
AMCG00001104 mRNA downstream 157480 15241652 ~ 15251730 (-) True AMCG00001104
AMCG00001117 mRNA upstream 22762 15435954 ~ 15445927 (-) True AMCG00001117
AMCG00001115 mRNA upstream 33257 15446449 ~ 15460505 (-) True AMCG00001115
AMCG00001116 mRNA upstream 50696 15463888 ~ 15474968 (-) True AMCG00001116
AMCG00001124 mRNA upstream 88624 15501816 ~ 15511478 (-) True AMCG00001124
AMCG00001126 mRNA upstream 116916 15530108 ~ 15546624 (-) True AMCG00001126
TU161398 other downstream 228888 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 810640 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 2049440 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 2657694 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 4708862 10697707 ~ 10700348 (-) False AMCG00000960
TU161636 other upstream 147153 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 1759678 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3111700 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 3142638 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 3475573 18888765 ~ 18889757 (-) True G129566

Expression Profile