RNA id: AMCG00001120


Basic Information

Item Value
RNA id AMCG00001120
length 2498
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00001120
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15525846 ~ 15529959 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGATCCAACCCGCAGCTCACCCCTCCTACTGTTTCAGGggaatgtgtatgttttatgatGCCATCTGCAAGGGAAGCCAAAGGTTGATGTGCCACATGTTCTAGTGTTTGAGTTAAAGCCAAAGTGTAATCACACTGGAGCTCAGAAGCGGTCTGTCATTGCTAAGGTGTGAAGTCTTTGATAAGTGTTCACCATGGCCTCACCTCCAGTTCCCAGTGGCCACACAGTGGTCATAGTTGGCGGTGGTCTGGCTGGTCTAGCTGCAGCAGCCACCTTGGTCAAGGCAGGGTTTTCAAGCGTGAAGGTATTGGAAGCCATGGACCGGCCAGGGGGCAGAATCCACACCACTAAACCCTTTGGTCCGGACATCATTGAGCTGGGGGCCAACTGGATCCACGGTCAACAGGGAAACCCCATCTATCACCTGGCCAAGGAGCATGGCTTGCTGACTGAGGGAACAGAGACTGTCATGTGCCTCCCGGGCTTTGTGACTCCCCGGGATTATTTCTTTCATGAGCACGGGAGGCAGCTTCCCGTGGAGCTTGTGGAGGAGGTGTGCTCCTTTTTCAGCAAACTCACCGACAAGGCATTCGAACACGCACTGGATGAAAAGTACACCCACAAATCACTCGGCGATTACCTCGATGAAGAGTTCAAAGACTCGCTCTGGGCAAACTCAAAAGACAGCAAGAGGGTTTTTGAGTGGTGTAAACGGAGTGAGTGTACGGACGAGGCGAGCTCCTCTCTGTATGAACTCTCAGCCTCCGAACTTGGACTGTATACAGCTTTAGATGGAGGGTTCTTCAACTCCCTGGGACCTGGGGGCTACCAGCATATCTTAGATGTGTTTTTGAAGAGCCTAGCAGCTGACGTTCTCGTTTGTAGCAAGCCAGTGAAATGTATCCAGTGGGGTCTGGATAAAAAGGAGCAGGCCTCTGAGGTTGCCCACCCAGTGAAGGTCATATGTGAAGATGGTCAAGAGCTGCACGCCGATCACGTCATAGTGACGGCCTCTCTGGGCGTCTTGCAGGAGAAGGCCCCTGCCATGTTTGAGCCCTCGCTGCCGGAAGTGAAGATGACCGCTATCAAGAAGCTGGGCTTTGGCACTGTCGACAAGATCTACCTGAAGTTTAATGAGAGGTTCTGGCCCGAGGACTGTGCTGGAATTCAGCTGGTCTGGGAAGAAGGCTTTGAGGATAAGGAAGTCTTGACCTCGTTGGATGAGGAAAGCTGGAAGAAAGCCTGGTACAAGAAAATCTGTGGTTTTGATATTGTGGCCCGCCATCCCACTGTGCTCTGTGGCTGGATTACAGGCAGAGAAGCAAAACACATGGAGACTCTGGAGGAGGAGGTGATTGGAGAGGTTTGTATAAGGTTGCTGAGATCTTTCACTGGGTGGAAAGTTCCTGATCCAGTCAGTGTGTTGACATCCAGGTGGTGGAAGAATCCATATGTACGAGGTTCCTACACTTACATACCTTATGGGGTGGATGCTATGAAGCAGCAAGCAGCCTTGTCTGATCCGCTCCCATCTTCTACCTGCCCCCCCAAACTGAAGccTCTGCAGGTGCTATTTGCTGGGGAGGCAACCCATGTCAAATTCTACACCACCACTCACGGCGCCTATCTTTCGGGGAAAAGGGAAGCTCAGAGGATCATCAAACATTATAGGCACATGACACCTTGGTATTGTTCGTAGCCTTCAATAAAACCTCTGATTAAATTCATGGTTAAacatgcacttgtttatttgtgaaCTACAGAGGATTTACTTATTaaaatactactattactactactaattataataatgattaagtGTAATTTATGAGTATAGTCTGTGCAAGATTAATGACACACTGTGATGCACCATTTGGCCACCAGAGGCTGTTCAGATCTACTTTGAACAGAGTGACTGTCTTGTGGCCTAAACTTGTCTTGCTGTTCTGGCAACATTGCACAATGTCTTTATATGGTGGATTGTTagctgtgtgtttaaatgtgaaatCTCGATTAAATTGACATGTTTTGTctgattgtgtgcatgtgtgcagttTTCTTTTAGTGTAATGAATTGACCTTGACTGAGAGCGGGagtagtacagtatagtatagtagtaCTAAAACACCACGATGAAATCAATAAAGGTATAACCATCAGCCAGGAAAACATATTCACACACTTCTATTTTTGCATTTCAGCATGTTAGTCTGATGAATGCCGAGTTAGCACCTTATTCCCAGTAGGTGTTTTGTAGTCAGAACGATTGCAGAAGTGCGAGactatgttaataaacaaaTAGCCTTGTGTTCATTTCTATTTGTGTATCTCTTGTGTGGGTTTAGGTCCCATTGCGTGCCCTTATTATATGGTAATAATGTTGCTACCTTTAGGTATAGAGTAGATAAAGAAAGGTTGCATTTTAATGCTGAGAGAGAAAGGTGTTGCGCTGAATTATTGAGTTTAGAGTTGAAGGTGAAATCTTGATGAAACTGC

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161548 lncRNA upstream 61993 15462713 ~ 15463853 (+) False AMCG00001114
TU161551 lncRNA upstream 63335 15460532 ~ 15462511 (+) False AMCG00001114
TU161512 lncRNA upstream 112739 15412780 ~ 15413107 (+) True G128827
TU161502 lncRNA upstream 113136 15409112 ~ 15412710 (+) True G128823
TU161494 lncRNA upstream 166832 15358643 ~ 15359014 (+) True G128815
TU161624 lncRNA downstream 36442 15566401 ~ 15886602 (+) True G128919
TU161635 lncRNA downstream 351396 15881355 ~ 15882299 (+) True G128928
TU161646 lncRNA downstream 391414 15921373 ~ 15921574 (+) True G128938
TU161647 lncRNA downstream 391715 15921674 ~ 15922039 (+) True G128939
TU161649 lncRNA downstream 393073 15923032 ~ 15924810 (+) True G128941
AMCG00001123 mRNA upstream 1646 15518473 ~ 15524200 (+) True AMCG00001123
AMCG00001122 mRNA upstream 7413 15511511 ~ 15518433 (+) True AMCG00001122
AMCG00001121 mRNA upstream 26721 15487153 ~ 15499125 (+) True AMCG00001121
AMCG00001113 mRNA upstream 44030 15475824 ~ 15481816 (+) True AMCG00001113
AMCG00001114 mRNA upstream 62488 15461067 ~ 15463358 (+) True AMCG00001114
AMCG00001125 mRNA downstream 100755 15630714 ~ 15645670 (+) True AMCG00001125
AMCG00001128 mRNA downstream 224739 15754698 ~ 15800157 (+) True AMCG00001128
AMCG00001129 mRNA downstream 401767 15931726 ~ 15951003 (+) True AMCG00001129
AMCG00001130 mRNA downstream 423756 15953715 ~ 15958009 (+) True AMCG00001130
AMCG00001135 mRNA downstream 459213 15989172 ~ 16002152 (+) True AMCG00001135
TU161504 other upstream 104966 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 351699 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 3514421 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 5371659 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 6905651 8617199 ~ 8620195 (+) True G127134
TU162207 other downstream 2493101 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 3015934 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 3025192 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 3358432 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 3513345 19043304 ~ 19142145 (+) True G129594

Expression Profile