RNA id: AMCG00001121


Basic Information

Item Value
RNA id AMCG00001121
length 4002
RNA type mRNA
GC content 0.47
exon number 16
gene id AMCG00001121
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15487153 ~ 15499125 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGTTGACTCAGGAGGATTGGTTGTCCTTCAGTCCGAACATGCAGAGCAGCAAGGAGGCTGGCAGGCAGGGGCTGAGGCTGGGCCAGCGAGCCCAGGGAGCGCACAGTCTATAGAGCCGCACAAGGACAGCCCAGCCACAGGGCCTACCACCAGCGATGTGCTTCAGTCTGATGCCAGAAGCATGACACAGCAACAGATGGCGTCATCCCGATGCAGCCTGCGTATCCAGGGGGATGATAACTTGCAGTCCATGCTGGTGGGGACGGTGATGAGGAAGATTAAGTCTCGCACCTGGAAGAAGCAGCGCTACTTCAAACTGCAAGAGGACTGCATGACCATCTGGTACAAGTCAAAGAAGACCGGGAACAACCACTCCACCTTCTCTGTGAGTGACGTGGAAGCTGTGCGGGAGGGCCACGAGTCCGAGGTCCTGCAGAGCATTGCAGACGAGTTCCCCCCTGACCGCTGCTTCACCCTGGTGTTTCGCGGGCGCCGTGGCAACCTGGACCTGGTGGCTGATTCGGCAGAAGAGGCCCAGTCCTGGATCAAAGGCATGCGGAAACTGATAGAGAACCTGGAGAACATGGGCCAAAGGGAGAAACTGGACCAGTGGATCTGCGACTGGTTCCAGAAGGCAGATAAAAACAGAGATGGCTGTATGAACTTTAAGGAGGTGCGGGACCTGCTGAAGATGATGAATGTGGACATGAATGAGCACCACGCACTTCGCCTATTTAAGATGGCTGACAAGTCCCAGTCGGGCACACTGGAGGACGACGAGTTTGTGTTGTTCTACAAGATGCTGACGCAGAGGGCAGACGTGCTGCAGGTGTTCCAGGAGTACTCGACCGATGGGCAGAAGCTGAGCCTGTGTGACCTGGAGGAGTTCCTGCGGGAGGAGCAGCTCGAGGGAGATCACAGCCGGCGTCAAGCTATGGAGCTCATCCAGCACTATGAGCCCTCGGACACTGCCAAGATGCTCCATGCCATGTCCATCGATGGGTTACTCATGTACCTGTGCTCTCCTGAGGGCTCCATCTTCAACCCCCAGTACGAAGGGATCTACCAGGACATGAGCCAACCCCTTTGCCACTACTTTATCTCCTCCTCCCACAACACATACCTGATAGAGGACCAGCTCCGAGGGCACAGCAGTGTTGAGGGCTACATCCGCGCCTTGAAGAGGGGTTGCCGCTGTGTGGAGGTGGACTGTTGGGATGGCCCAAATGGAGAGCCCATCGTGTACCATGGACACACCCTCACCTCCAAAATCTTCTTCAAGGATGTCATCCTCGCTCTTAGCAACTATGCCTTCAAGgTATCGGAGTACCCGGTCATCCTGTCCATTGAAAACCACTGCAATGTTGAGCAACAGAGAGTCATGGCCCAACACCTCAATGAAATTCTGGGTGACAAGCTGCTGAAAACCATCCTGGATGGCACCATTCCCAATAGGCTACCTTCTCCTGAGGAGCTGAAGGGGAAGGTGCTACTGAAAGGGAAAAAGATGGGCAGCCTGGAGGAGAGCGTGAACGGGGTGGCCGAGGAGCACTTCACCGGGGAGGTGAGCGATGAGGACGAGGCCGCGGACATCGACGAGGACCACCTCCGCAATGACACGCTGCGCAGGAAAGGCAAGAAATCTAAGCAGCGACTGTCCAAAGAGCTCTCCGACTGCGTGGTGTACTGCAAGAGTGTGCACTTCAGCAGCTTCAAACACTCCCGGGCGCACTCCAAGTTCTACGAGATTTCCTCCTTCACTGAGTCAAAGGCACGCAAGCACATACGGGATGCAGGAGTGGACTTTGTGCAGCACAATTCTAGGCAGCTGACACGGGTTTACCCCAGTGGCCTGAGGACAGACTCCTCCAACTTTAATCCACAGGAGATGTGGAATGTGGGTTGCCAAATAGTTGCACTGAACTTCCAGACAGCTGGGGTGGAAATGGACCTCAACGATGGACTATTCAGCCAGAATGGCCGCTGTGGCTATATACTGAAGCCCACGTTCATGAGAAGCAGTGAGGAGAGGTTTGATCCAGAGAACCCTCATGACAGAGATGGCTACAGACCCCTAAGACTTTCTATACAGGTGATCAGTGGACAACAACTCCCAAAGGTGAATATGAAAGAGGGCTCCATCGTTGACCCACTGGTGAGAGTGGAGATCCATGGTGCGCCACTGGATCAGGCCAAACAGGAGACCAAGTATATTGACAACAATGGGTTTAACCCGGTGTGGAACGAGACCCTACAGTTCAGGGTGCATGTTCCTGAGTTGGCTCTGGTGCGCTTTGTCGTGGAGGATTACGACAAGACGTCTAAGAATGACTTTGTAGGCCAGTATACCTTACCATTCATGTGTATACAGCAAGgTTACCGCCACATCCATCTCTTGTCTAAGGATGGAACCAGCattcctccctcctccctcttcgTGCACATCAGGATTACTGACATCGCATGACACCTTTGCAAAATACAGTTACGGCACGGAGACCGCAAGACCATGGCTTCCGTATTCCTGAACACAACTTATGTGTGCATATATTGCTACACAGCTACACCGTGGCATTGTAAGAGGAAAAATATACCTGGATCCTCCACCTCCCCACCTTAAGGCATTTTCTTAAAGTCTGTTGGTCTGAAATGGGGCTCCCGAGATCTGGATTTACCgaagaaagaaaactgaaagaatTCCTTAAGCTGTGGGAGGATACATTGGGGGAAAAGATGATATAGATGAAACCAACTCCCTCTGAAGTGGATCTCGCATGCTGAATGGGAAACTGCATATAAAATCATCCACGAGTTTGAAACCTCAATTCACTTGCATTTAGGGTGCAATACTCTTACTTTgcttctaaaatatatataaaaaacaacgGGCGTTGGAAAATTATAGGAAACCAATGGTATGTAAACAGTTACGGTCACTGCTCCTGTGTTGGGAGTGCAAGGTTGTCTTCACAGCAGGCATGTTGCAAAAAGGACTAACATCAAATGCACTGCTGTGTTCTTGCACAAGACCTGAGCACTGCCttgcaagaaaatattgaaattaattgtatatttctgACAGTATACGAAAGTAGATAGTCAAGTTCAGTTCTTTCTAAGCTACAGGGTATTTTTACTGAATATGATCATAGATTTAGGAAAGCTAAAGAAGCATTACCTAGTGTGCCACACTGAAGGAAACGATATCTGTAAAAGCCAGGACTGAAATCAATATCCACACCAATTCATCTGccataaaatactttttgagTTAATATACCACTTCATCAGTGCAATACTTTCAGGGAGTTTGTCATTTGAGGCAGGTTTATATGGCATGTTTTCTAACTATAAGCTGGAAGAAACAATCTGAACAATTATTGGACACTGCAATATCACCTCATAAAATCACAGATAAATCTATAAGAATGGAGTCATGGACACCATTGACCCACCAGTAAGGTTATGTTGCAATAtagtattcaaattaaatattaaatctataATCCTAAACTTGCTGTTATTTCAGTTTGGATAGGTTCAGCATGACATTACACACAGccttacacatatatatgcatgttaCACTCCGTTTCATATAGCAACAATATGCCTTTCATGTATAAATCAAGTATAGCTGAATTAAGTTATTATTGCAGTCCAATGTCCTTTATATAATATTCTAACCTGTATGAGCTTAAACATACATTCTTACTGCATTGTTTtgtaacaaaatgtacagatttgcTGCTGGAGTTATtcgtattatattttttatatttttattttgctcttatAAGATATTTATTGCTCATGATATGTTAATAAAGGCAACCAACCTATTTGACGctattattactgttttacacattttatttacataggctatatatgtacagtactgtgcaaatgttttaggtgtggaaaaatgctgtaaagtaagatttcaaaaatagatgttaatagattatacttatcaataaacaaaatgcaaagtgag

Function

GO: NA

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161548 lncRNA upstream 23300 15462713 ~ 15463853 (+) False AMCG00001114
TU161551 lncRNA upstream 24642 15460532 ~ 15462511 (+) False AMCG00001114
TU161512 lncRNA upstream 74046 15412780 ~ 15413107 (+) True G128827
TU161502 lncRNA upstream 74443 15409112 ~ 15412710 (+) True G128823
TU161494 lncRNA upstream 128139 15358643 ~ 15359014 (+) True G128815
TU161624 lncRNA downstream 67276 15566401 ~ 15886602 (+) True G128919
TU161635 lncRNA downstream 382230 15881355 ~ 15882299 (+) True G128928
TU161646 lncRNA downstream 422248 15921373 ~ 15921574 (+) True G128938
TU161647 lncRNA downstream 422549 15921674 ~ 15922039 (+) True G128939
TU161649 lncRNA downstream 423907 15923032 ~ 15924810 (+) True G128941
AMCG00001113 mRNA upstream 5337 15475824 ~ 15481816 (+) True AMCG00001113
AMCG00001114 mRNA upstream 23795 15461067 ~ 15463358 (+) True AMCG00001114
AMCG00001112 mRNA upstream 135793 15351085 ~ 15351360 (+) True AMCG00001112
AMCG00001109 mRNA upstream 163514 15318950 ~ 15323639 (+) True AMCG00001109
AMCG00001108 mRNA upstream 168715 15295104 ~ 15318438 (+) True AMCG00001108
AMCG00001122 mRNA downstream 12386 15511511 ~ 15518433 (+) True AMCG00001122
AMCG00001123 mRNA downstream 19348 15518473 ~ 15524200 (+) True AMCG00001123
AMCG00001120 mRNA downstream 26721 15525846 ~ 15529959 (+) True AMCG00001120
AMCG00001125 mRNA downstream 131589 15630714 ~ 15645670 (+) True AMCG00001125
AMCG00001128 mRNA downstream 255573 15754698 ~ 15800157 (+) True AMCG00001128
TU161504 other upstream 66273 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 313006 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 3475728 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 5332966 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 6866958 8617199 ~ 8620195 (+) True G127134
TU162207 other downstream 2523935 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 3046768 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 3056026 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 3389266 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 3544179 19043304 ~ 19142145 (+) True G129594

Expression Profile