RNA id: AMCG00001124


Basic Information

Item Value
RNA id AMCG00001124
length 5642
RNA type mRNA
GC content 0.52
exon number 12
gene id AMCG00001124
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15501816 ~ 15511478 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGATAATACACGTGCAAAGAATAAAGTGCTACATCATACGAACACATGGTTATGTTTAGCTGCTGGGGCGGTTCAGTGGAGCAGTGACTTTGGTGCTCCCCTCCCCTACCTAtcctacataaataaacaaaaatggcGGCGCATAGCGGTGATAAGTGAAGACGGGGGGAACTTAAACATAGATCCAGGAGGATGGAGAGCAGCCAGAGCAGTTTGGTTTTGGATGGGCAAGAGGAGAAACGCAGTGCTGTACAACAAGGTCCCCAAGAGGAAGCTCTTGTAGAGTCATCGTGTCCAGAGCCGGGCAGTGGCTCTGCACTTACCATAGACCGCAGCGTGGACTCCGACCTCTTAGAGAAAATTGTGGGCAGTGATACAACAGAGATCACAGAAGTCTCAGTGGAGACAGAAGGACTGTACCACTGTGAGAAATGCAGGCAGAATTTCCCCGACAGCAACCTGTTCTCCTCTCATCCTTGCTTGTTGTCACCCAGTTCCCCCATGACTGAGCCCTCGACTGCGGTGGCCTGTGTGGAAAAGACCCAGTCGGGATGTTACATGTGCCCATTATGTGTAGAGGCTTTCCCCCTCCCCAGTGCACTCAAGCAACACTTCCGGACACACCGGGATGAGCCCAGTGGGCCTGTCTCCTGCTCCGAGCCGGGCTGTGGGTTCAGCACCCTGGACCGACAACAGTACCAGAAGCACCTGCGCTCCATCCATTCCCTGCAGCTGGTCTCCTGCGCCTTCCGCTCCTGCCGCCTGGCCTTCTGCAGCCTGCGGGAGATGGAGGCGCACCGGCGAAACCATTTCCCCTTCCACTGCACGTGCTGCAGCTTCGTCACAGCCAACGCCAAGCAGCTGAGTGACCACTGTCGAGGACACCAGCGCTCCGGTCCTGCTCAGCGTGagGAGAAACCCGACGATTCAAAGGCTCTTCCAGTGCAGGAGTCTGAGGTGGAGCCAAACAAAGCGGTGCAGGATGAAGGTAGTCTGTCGGTGCCAGAGAACGGACGAAGGCAACCAGCAGTCAGAATCCCTAGCTTGAAAACAGTAGAGTCGCaagatgaggaggaagaggaggaaggagCAGAGCAAAGCAGAAATAAAGCAGCAattgaggaagaggaggagcaggaTGAGGAAGTAGCCCCTAACGTTGATTCTGCAGATGTTCACCTCAAAGCGCACATAGCCAAAGGAATGGAGCACCTGTATCGCACCCACATTTGCCCAGAATGCCGCCGCTGCTTCAAGAAACGCACACACTTACTGGAACACCTCCACCTGCACTTCCCTGACCCCAGCCTGCAGTGCCCCACCTGCCAGCACTACTTCACCAGCAAGAGCAAGCTGCGCATCCACCTGCTGCGGGAAGCCGGTGAGAAACTTCACCAGTGCCAGATGTGTGAGTACAGTGCGGTGGAGCGCAACTCCCTGCGCCGGCACCTGGCCAGCGTCCATGGAGAGGAGTTGGAGGACAGCTTCTATTCAGACGTGTACCCTTGCCCCACCTGTAAGAAGACCTTCCGGCTCAGCCAAGCCCTGAAAGCCCACATGAAGTCCCATCACACCACGTCCGATGTGCAGCCCCTGCTCTGCTTCCAGGAGGGCTGCTCCTTCAAGTCTATGGATAAGAAGGAGTTCCAGAGACACGCCAAGGACAGTCACGGTGTGAAGGCGGTGGAGTGCCGGCACCATGCCTGCAGTGCCTTCTTTGGTACCAAGGAGGACATGGAGGCCCATCACCGCACACACCTGGCCTTCCACTGTCCACAGTGTGACTTCTCCTGCTCCAACAAGAACACCTATCAACGCCACAAGCGCCAGGGCCACCCGGGCACCGAGCAGTTGCACTGCAACTTCTGCCCTTTCACCTCCTTCAACCCTGTGGAGTTTGACGAGCATGTGAGTCGGCTGCACGCCAACGAGAAGATCCACCACTGCCCCCAGTGCAGCTTCGTCACCGCCCACAAACGGGTGCTGGGGCGGCACATGCTGCTGCACACTGGTGAGAAGCCCCACAAGTGTAAGCTGTGCGATTTTCGGTGTCGGGATGAGACCTACCTTTCGAAACACATGCTGACGCATTCTGATGATAAGAACTACATGTGCTCAGAATGTGGCTACGTCACCAAGTGGAAGCACTACCTGAACGTGCACATGCGCAAACATGCTGGGGACCTCAGGTACCAGTGTAACCAGTGCTCGTACCGCTGCCATCGTGCCGATCAGCTCAGCAGTCATAAACTCCGGCACCAGGAAAAGTCCCTGATCTGCGAAGTGTGTGCTTTTGCCTGCAAGCGCAAGTATGAGCTGCGCAAGCACATGCGTGTCAAACACTCACAAGGAGGTGACTACCAGCTCCCTGTCTTCCAGTGCAAGTACTGCAGCTACAACACACACTACCGCCAGGCACTTTTTAACCACGAGAACTGCAAGCACACTCGACACCGCGAGTTccgctgtgctctgtgctcttaCTGCACTTTCAGCAGCACCAGCCTGTTTTTGCACAAGAGGAAGGTCCATGGTTATGTGCCAGGGGACAAAGAGTGGCTGGAGAACTATGCTAAACGGGAAAGAGAGATTACTGTATCAGACTTACCACAGGGCTGCTGTGAAAACCAAGCTGTCCTCCCCGATAAAGTTAATAGCACTGCTGAGGGTCATGTGACTCCAGATGGACCTGGTAGTATTCAATTAGATTCCCACGTATCAGTGGTGGATGCTGCAGTTGCTAATACAGAGGACATACTGGAAGGCAGCTGTGTCTTTGCAAACACTAATGAAAGTACCTCGGAGGCCCTAGATAAATGCAGCCAAGGAACTCCAAGCATTGGGGCACCTCTTGTCAATCGGTTGAGGGAAGCAGAAGAAGAGGATATGGTGATGGCAGATTGTGAAGAACAAAGTGACCCTGAAGAGAGTGAGGTGCCTCCAAAAGAAATTGGAGGAGTTAGAGAAGGCTTGGacacccttgagcaaggcaggACACATGCAATGGATGTTGCCAACCAAGAGATTTTGAAGTGCACAATTTCAGATGAAAGGGAGGAAGCTGGGTTGTCCTCACAGTCCAGAGGCCCAGATAAGTTAGAACTCACTCATTCTGAGTCTGTGTTAAAGGCCCTGAGAAAGCAGGACAAGGACCAGGCTGAAGCCTTAGTCTTAGAAGGGAGAGTTCAGATGCTGGTTGTTCAGACTAAAGCAATCGTATTCCGGCTCTCAACTATTGATCGCCACTGCACCATGTGCTCAAACCGCAAGTCTAAAAAAAGAACTTTGTGTAGACCAAAGCGGCAAAAGACACTTAAGCGTGTTAAAGAGGTGGAAGTAGAGGATGCCAATGACAAAGATTTtgagggagaagaggaggaggagAGTCGGTGCCTGAATCAGCATGTGGCCCTCAAACACAAGGGTGTGAAGCCGCATAGCTGCCGATTCTGTGAATTCAGCACCACGCGCCGCTACCGTCTGGAAGCTCACGAATCTCTGCACACGGGAGTGGGCCGGCTCTCCTGTGAACTCTGTAGTCAGACCTTCGGCACCAGGTCCAAGCTCCGGCTGCATCGACAGCGTGTCCATGATAAGCGGCCCACCCACTTCTGCTCGTTCTGCGACTACAGCGGCTACAGCCTAAATGATGTGAACCGACACAACCTGAGCTGCCACACAGGGGAGCTTAGTCACGCCTGCACGCACTGCAAGGCCCTGTTCAGCTCGGAGACCGCGCTCAAGCAGCACTGTCACCGGCAGCACCAAGACCCCACCAGCCTAGCTTGCCCTCAGTGCAACTTCACGTGCCACAGCCAGGCTACCCTCAAGGGCCACCTGCTTCGCAAGCATCCCCAGCTGGAGTGCCCCACCTGCCAGGTGGTCTTCCAGAGCCGAGAAAGCCTTGATGACCATCGCAAGACCCATTTCACACAGCGATGTCCACTTTGCCCATTTGCTGCTCGTGAGCGCCAACCTCTGGCCCAGCACCTCTTGGATGAGCATGAGGACGGTGCCCCTGAAGAGAAACCCCTGAAGTGTGCTGCCTGTGGGTTCTCATGCCGCCATCAGCTGGTCTTTGAACAGCACTATCACATGAGAACTCACCAGGAGGAGCGCAAGTATCTTTGTCCAGAGTGTGGCTACAAATGCAAGTGGGTGAACCAGCTGAAATATCACATGACAAAGCATACAGGTGACAAACCATACAAGTGTGAGGAGTGCGACTACTGCACGAACCGCGCCGACGCCCTGCGCATCCACCGGGAGACGCGCCACCGTGAAGTGCGCTCCTTCATCTGTGAGAAGTGCGGCAAGGGCTTCAAGACCCGCTTCCTGCTCAAGACGCACCAGAAGAAGCACAGCGAGGAGCGGCCCTATGTGTGCCGCTTGTGCCGGCGCGCCTTCCGCTGGCCCGCCGGGCTGCGGCACCATTACCTCACCCACACCAAGCAGCACCCCTTCCATTGCCTGCACTGTTCGTACCGCGCCAAGCAGAAGTTCCAGGTGGTGAAGCATCTCCAACGCCACCACCCCGAGCAGCCCCTGGAGCAGAGCATAGGCAAGGACCCCGGGCCCCATGCGGTCTCTCTGCAGCAAGCCCGGCTCGAGGTGCTGGAGGAGGGGCCTGGAGGAGGGGATCTGGTTCAGGAGGCAGAGGAGCTGCAGCAGGAAACTGGGGAGCAGGAGCAGGGAGACGCAGGTAGATAGGGGCTGTTACCAGACTTGCTTGATAAGGACTCCACTGTATTTCTTGCAGTAAATCAAGATTGGTTATTTCTTTTTCAACCTTCATGggtttcagagaaagaaaacggGACTATACAGGCCTTTTCTTACTGTAAGTTGTCTGATCGAGGATTTGTGAAACgaagggggtgggggcacaGCAGCAGCCCagatacattgattttattctctcaaattcattaaattatattttctcctAGAGCATCATGAGCTCTTGCATCGGTTTATCTTGGAACAGAAGTGCATTATGAGTCAATCCTTTTACATCTGATCTaccctgtattttttttctctggatttttattttgttcaaaccACATTCATTTTTCCAATTTTTCTGGGATAGCAGACTCCTCTTCAGCTcctattaaatgtatgttacaTTAATCATTACTGTAATAATGTGGAATACTTTAGACTTTAAgattacaacaaaaaagtatGCTAGATTTCACTATATATGGCTGAAAGTTACTGTAAATGCCACCAGGATAGTGTGCCTGATACTTAGATAGACTCTTATATGCTGATCTTAAACACTTTCTAGCCAGCAAAAGAACATGGGGGCATTTAAGCAAGAGAATGATGTGAAATCATTTGTCTAACCTTATAACCATGTGCTGTATGCTTGAATTCAGACCTTCCAAAAACAGTGTTAATTGCTACAAGAATGCTACATTTCTGCTGACCACTTCACTGCCTTTCTAATTAAGATGTGTAATTAactgtatattatgtatttaaaaagaaacttaaGGCTCTACAAAATACcatgtacaaaaatatgtaacCTGACAGTGcattgtcaattaaaaaataagagaagAATATTTTGTTACAGCAAATCAATGTACTCTATTCACAGAGTCTCCTGTGCATTTTACCTCACAA

Function

GO: NA

KEGG:

id description
K24851 ZNF142; zinc finger protein 142

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161589 lncRNA downstream 38027 15462717 ~ 15463789 (-) True G128890
TU161518 lncRNA downstream 68676 15364067 ~ 15433140 (-) False AMCG00001118
TU161602 lncRNA upstream 8138 15519616 ~ 15559349 (-) True AMCG00001127
TU161603 lncRNA upstream 42808 15554286 ~ 15559349 (-) False AMCG00001127
TU161707 lncRNA upstream 512680 16024158 ~ 16027580 (-) True G128976
TU161795 lncRNA upstream 841957 16353435 ~ 16378315 (-) True G129033
TU161811 lncRNA upstream 1008703 16520181 ~ 16574599 (-) False G129042
AMCG00001116 mRNA downstream 26848 15463888 ~ 15474968 (-) True AMCG00001116
AMCG00001115 mRNA downstream 41311 15446449 ~ 15460505 (-) True AMCG00001115
AMCG00001117 mRNA downstream 55889 15435954 ~ 15445927 (-) True AMCG00001117
AMCG00001119 mRNA downstream 69486 15409170 ~ 15432330 (-) True AMCG00001119
AMCG00001118 mRNA downstream 123882 15364767 ~ 15377934 (-) False AMCG00001118
AMCG00001126 mRNA upstream 18630 15530108 ~ 15546624 (-) True AMCG00001126
AMCG00001127 mRNA upstream 46481 15557959 ~ 15567260 (-) False AMCG00001127
AMCG00001133 mRNA upstream 400604 15912082 ~ 15913139 (-) True AMCG00001133
AMCG00001132 mRNA upstream 404713 15916191 ~ 15917611 (-) True AMCG00001132
AMCG00001131 mRNA upstream 410913 15922391 ~ 15926770 (-) True AMCG00001131
TU161519 other downstream 68347 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 321494 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 903246 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 2142046 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 2750300 12732184 ~ 12751516 (-) True G128160
TU161636 other upstream 48867 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 1661392 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3013414 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 3044352 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 3377287 18888765 ~ 18889757 (-) True G129566

Expression Profile