RNA id: AMCG00001125



Basic Information


Item Value
RNA id AMCG00001125
length 432
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00001125
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15630714 ~ 15645670 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAGCCCAATCCAGTTAATCCTAgaGCCGAGGAAAAGAAGCAGGTACCGAAGAAGGATAAGATGAAACAGAGGCGAGAAAGAAGTATTAAGCTGGACAAGGAGGAGCAGAAAGCGCAGGCCAAGAGGAAGGCCACACCGGTGGTGGGGGACATGCAGCCCCTGGCCGATGCCCTGCCAGAGCTCTCTGATCTGGTCACCGCCAGCAAGGCCACGGCACGCAGGAAATCCAGGGTCCCTGTAAAGAAGAAACCGGGACCAACAGACTTCAGTCAGATGAAACCAGCCCAGAAGCGCAAAGTCTTGGAGGAAGAAACGGCCCATTTTTCGGAAGCCATTCAAAACACAGTCTTCAAAGCCAATCCCCTGGCCTGTATTGGAGAGCACCTCCGGAAGAGGCTGaaacaggaagaggaggagagccCCAGCTAG

Function


GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03420 Nucleotide excision repair
ko04110 Cell cycle
ko04111 Cell cycle - yeast

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU161548 lncRNA upstream 166861 15462713 ~ 15463853 (+) False AMCG00001114
TU161551 lncRNA upstream 168203 15460532 ~ 15462511 (+) False AMCG00001114
TU161512 lncRNA upstream 217607 15412780 ~ 15413107 (+) True G128827
TU161502 lncRNA upstream 218004 15409112 ~ 15412710 (+) True G128823
TU161494 lncRNA upstream 271700 15358643 ~ 15359014 (+) True G128815
TU161635 lncRNA downstream 235685 15881355 ~ 15882299 (+) True G128928
TU161646 lncRNA downstream 275703 15921373 ~ 15921574 (+) True G128938
TU161647 lncRNA downstream 276004 15921674 ~ 15922039 (+) True G128939
TU161649 lncRNA downstream 277362 15923032 ~ 15924810 (+) True G128941
TU161684 lncRNA downstream 376588 16022258 ~ 16062179 (+) True G128958
AMCG00001120 mRNA upstream 100755 15525846 ~ 15529959 (+) True AMCG00001120
AMCG00001123 mRNA upstream 106514 15518473 ~ 15524200 (+) True AMCG00001123
AMCG00001122 mRNA upstream 112281 15511511 ~ 15518433 (+) True AMCG00001122
AMCG00001121 mRNA upstream 131589 15487153 ~ 15499125 (+) True AMCG00001121
AMCG00001113 mRNA upstream 148898 15475824 ~ 15481816 (+) True AMCG00001113
AMCG00001128 mRNA downstream 109028 15754698 ~ 15800157 (+) True AMCG00001128
AMCG00001129 mRNA downstream 286056 15931726 ~ 15951003 (+) True AMCG00001129
AMCG00001130 mRNA downstream 308045 15953715 ~ 15958009 (+) True AMCG00001130
AMCG00001135 mRNA downstream 343502 15989172 ~ 16002152 (+) True AMCG00001135
AMCG00001134 mRNA downstream 362335 16008005 ~ 16008487 (+) True AMCG00001134
TU161504 other upstream 209834 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 456567 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 3619289 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 5476527 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 7010519 8617199 ~ 8620195 (+) True G127134
TU162207 other downstream 2377390 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 2900223 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 2909481 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 3242721 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 3397634 19043304 ~ 19142145 (+) True G129594

Expression Profile