RNA id: TU161602


Basic Information

Item Value
RNA id TU161602
length 2411
lncRNA type read_through
GC content 0.34
exon number 5
gene id AMCG00001127
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15519616 ~ 15909126 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNNNGAAGAGTGCCCAGCCTGCCTATCACCCTGCCCAACATACGCTCATTGTATTGAGTGTCTGGGGTTTGGTACTGGCCCATTTGAGAAGAACTGCAGTGACTCATGTAAGAATATCAATCACACCATAAAGGATGATCTGGGAAGTGCGAAGGTTTGTAAAGAAAAGGACAAGGATAACTGCTGGATGATCTTCAGAATGACAGAACTGGATGGGCAACAACAGTATGCAGCGGAGATCAGAAAGGAAAGAGAATGTCCAGAGCCTCCGAGCATTGCCGCCATTGTAGGGGGAACAGTGGCTGGAGTCGCCCTCATTGGCTTTGTATTGTTGCTCATCTGGAAACTAATAACTTCTCTGAAGGACCTTAAAGAATTTCGTAAATTTGAAAAGGAGAAGCAGAAGTCCAAATGGAGtaatGCTGATAATCCACTGTTCAAGGGTGCAACCACTACTGTGATGAACCCCAATTTCTCGGGTGAATGAACTTTCACTTAATGATcttaatcaaaatgtgtttaaattattctcctcccagaataaaatgtattggttatatatatatatactgtggaAATACACTGGATTAAATCCTATCTCCTATTCGAGAGCACAATATCATattatgtgtgtattgtgtactCTGTTGTCTTCATCACATTCTCTCTTTTTATCTTCTGTTTAACTATTCTTaggtattattaatattaatcactTATAGGAGGTGGATatgaaaattattaataatgcattcttCTAATATAAAagcattgtttgttttgagtaTACTAACTGCttctattaatatttcatttcatgtaCCGCATAAGGGCTCTAGTTTTGGTTTCAGGAGCTTTACCTTTTGCACAATATAACAATTACTAATGAACGATCATTATATCTATGAAAACTCAAGAAACTCAGGAAATCTcaaattttattattaaattaaagattgcTGTAGTGTAGGTGTCAGAGTGAATCCCTGGAGTTTGTAATCAGGTCAATCAATATACTACCTAAAATACAAAAGTCAAAattataaaactttaaaaggaaattatcaTTCAAAACATATATGGATATGGATATATGGATATCAGTGGAAAATACATGTTACTCTGATTTTTCATCttgttaatacatttcaagtttATATCAAAGCTTGTCTGAACTTGCTGTATTGTAATTAAAGCCCATACAtgagattatttttgtatttagtgaaatgttatataattatCCATTTGCCTTTTTTCCTACTAATATGAAGGTTACTTTTTTGGAGTGAGTTTACAAATGTAGACAATGCCTTGTCACTGCAGATGGTACTCGATTGTTTTTGTCTATATGATAATGCAGTGTACACCAATGTGTTACTTTATTCTGCTGAATTAGCATggatttacaaaaaaatcttacatgaaacttcaaatgaaaatgtcaaatatcTTGTAATATTTTCTAATGCACAGTCATTTATGGTATCATGCTAAATGCAAAACTTAATTGGCCTAGTGATATAATTTCAACCAGGCATTAGGCCTTTACACTTCACAGCTTTATTGCATGTGTTTAACACAGTTCCTTGTGCAATATTAGACATTAGACAAGAGCAGGGGATTTCCTATATGAGATGCTCATGTGGTAATGTTTTCCATACATGGTAGATACACTTTAAAGGACTTTTCTTTGAACAAGACAACAGGAGATCCTGTATTAGACTAATTCAAACATTAGCAGAAACCTTCCTGTTTATTTGAACGATGCTGTGAGAAAAATAGATGTTCCACTGTCGCCATGGAAACAGAAGATTGTTTCTTTAGGACTAAATCCACAAACCTTGTGATAAACTCAGTGAACACACTGGTAGAAATAAACATTCTGACACCATAAGGATATGTGACTCTCAGCTACTGATGCTCAGAAAAGCTGGTGTTGAACATAACACACAAAGTATCAATTCTGAACCTCCTATTTCAAGATATGAATCATGCTAAAAGGgtggttttaaaaaatacagacacatttCCTGTTGTGATGTCACAGAACTTTGTATGTGCGGCTGAGTGTTAAATGATCATGGAGGGCAAAGGTGCCCTATTTTATGAACCAAAaaatatctgtatatttatctttttttgtgaAGTAGTagttctttttaaaaagagtacaACTGTATACTGTGATTCAGCCCCGTTTCCTAAGGTTGAATGACTTTGTTTTGGTATGTAAATTTACATAAACgtgctttatattttttaaaaactgtgtatacaattttttgttgtttttgtttgcatagtGAAATAAAATCCCTTGCTATGAAAACCAAaaaaaaaagaaaaataacacctTGGTATACTTGGATTCTTGCCAACAGCACAGAAAGCATAGGTGTAATCCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161589 lncRNA downstream 55827 15462717 ~ 15463789 (-) True G128890
TU161518 lncRNA downstream 86476 15364067 ~ 15433140 (-) False AMCG00001118
TU161524 lncRNA downstream 106424 15409210 ~ 15413192 (-) False AMCG00001119
TU161525 lncRNA downstream 106424 15409210 ~ 15413192 (-) False AMCG00001119
TU161528 lncRNA downstream 110462 15406768 ~ 15409154 (-) True G128839
TU161707 lncRNA upstream 464809 16024158 ~ 16027580 (-) True G128976
TU161795 lncRNA upstream 794086 16353435 ~ 16378315 (-) True G129033
TU161811 lncRNA upstream 960832 16520181 ~ 16574599 (-) False G129042
TU161809 lncRNA upstream 1009694 16569043 ~ 16574599 (-) True G129042
TU161837 lncRNA upstream 1316962 16876311 ~ 16880485 (-) True G129065
AMCG00001124 mRNA downstream 8138 15501816 ~ 15511478 (-) True AMCG00001124
AMCG00001116 mRNA downstream 44648 15463888 ~ 15474968 (-) True AMCG00001116
AMCG00001115 mRNA downstream 59111 15446449 ~ 15460505 (-) True AMCG00001115
AMCG00001117 mRNA downstream 73689 15435954 ~ 15445927 (-) True AMCG00001117
AMCG00001119 mRNA downstream 87286 15409170 ~ 15432330 (-) True AMCG00001119
AMCG00001133 mRNA upstream 352733 15912082 ~ 15913139 (-) True AMCG00001133
AMCG00001132 mRNA upstream 356842 15916191 ~ 15917611 (-) True AMCG00001132
AMCG00001131 mRNA upstream 363042 15922391 ~ 15926770 (-) True AMCG00001131
AMCG00001136 mRNA upstream 468296 16027645 ~ 16102748 (-) True AMCG00001136
AMCG00001137 mRNA upstream 701047 16260396 ~ 16275474 (-) True AMCG00001137
TU161519 other downstream 86147 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 339294 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 921046 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 2159846 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 2768100 12732184 ~ 12751516 (-) True G128160
TU161636 other upstream 996 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 1613521 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 2965543 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 2996481 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 3329416 18888765 ~ 18889757 (-) True G129566

Expression Profile