RNA id: AMCG00001129


Basic Information

Item Value
RNA id AMCG00001129
length 3649
RNA type mRNA
GC content 0.45
exon number 15
gene id AMCG00001129
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15931726 ~ 15951003 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGCGGGTTTGTGCGCGCAGCGGCTGCTTCGGCTCCTCTCTGAGCTACAGGACGGGCATTTTGGAGATACGGGTGCACGGCCGCTAGCATGAATGGGTCAGTGGTGAAGAAAACACAGGACACCCTGGGCAAAGTGATCAAGAAGCCGCCCCTCACGGAGAAACTGCTCAACAAGCCGCCGTTCAGATACCTGCACGACATATTCACCGAGGTGATCCGGACCACTGGCTTTATGAAGGGCCTCTTTGTAGAAGCAGAGATGAAATCAGACAATGTGAAGGATAAAGACGCTAAGATCACATTTCTTCAGAAGGTGATAGATGTAGTTATCATGGTGACGGGTGAGCCGCTGTCAGTTAAACCAGCGCGGATTGTGGCCGGACACGAACCAGAGAAAACCAATGAGCTGCTTCAGGCATTAGGAAGGTGCTGCCTCAATAAACTGTCCGGTGAGGATGCGGTGAAGCGGGTTCTGGCGGGAGAAAAGCCAGACCTCAAAGGAAAGCCCACCACCTCGAAGTCACAGGATAAGGAGAACCGAGAGAGCAAGGAAGACGACAAGAAGCGCCACAGGGCTAAGGAGGAGAAGAAGGACGCTGAAATCAAAGACCGCAGCACCAGCAGAGACCGAAAAGACCCGGACCTGCCAAAAGAGCAAGATGGCAGAAAGACTGAGAAAGATCGACACAGGGAGGAGAAAGGGCGGGAGCGCGAGAGGACGAAAGATCGGGACAGAGAGAAGGACAAGAGTCGGGACAGGGAAAAAGACAAGGGCAGAGAAAAGGACAGAGACAAAGCCAGGGAGCGCGATcctcagagagagaaagacagagagaaacggAGGGAGCGCCCCAAGGACTCAGAGGAAAAAACAAGAGAACCTGAGAAAGCAGAGAAAAGGtcAAGGGCGGCAGATGAGACACGAAACAGAAAACCCTCTGAGCAATCcataaaatcaatcaaagaTGAGgttCAGAGTCCTGCAAGAATACCTCGACCTTCTTCTGCCAAGGGACAGAGGAGAATGCCCAATCCCGGAGGGCAAGATGGATCAGACAGTGAAGCAGATGTAGAAACCCCTTCTGCCGAGAGGTCTGCCCCTTTGGAGAACGGTGATGTCACTGATGGGCTGCCTCCTCACGCcacacagagCAGGAGAATACCCAGGCCCAGCAGTGCCCGACCGGCCCCGCCCAGGGTCAAGCGGCAGGACAGCACAGACATGCCCTCTGTAGAAAGTAGGCTTGGCAGTGGAAAGCCTGCGTCAGCTGTGATCGTAGAGGGGAAAAAGCTCTCTGATGATGAGGAAGATGATGATGAACAGTTTGTGGTAGAAGAAGCCATGCTGCTCCCCCCTGACATGCCTGAATTGGAAATGGAGCCTTCTGTGGAGCTGAAAGGTGATGACAAACATGGTGGGCTTGTGAAAAAGATTTTAGAGACCAAGAAAGATTATGAAACCTCGGTATCTACCCCAAAGACAAAGGACCAggACTCGCTGGTGTCAGAGGCGGCAAGGAGGAAAGAGCGGGACCTGGTGTCCAGGGACATCGAGAAGCTGCGCTCCTCCATCCAGACTGTGTGCCGCAGCGCCCTGCCCCTAGGCAAGATCATGGACTACATACAAGAGGACATGGACTCCATGCAGAACGAGCTGCAGATGTGGCGCCGGGAGAACAAGGAGCACGCACGGGCGCTGCTGCAGGAGCAGAGAATAACAGACAGCGCTGTGGAGCCCCTAAAGGCTGAACTGGTGGAGTTGGATCAGCTCATCAAGGAACAGCAAGACAAGATCTGTGCTGTGAAGGCCAACATCCTGAAGAACGAGGACAAGATCCAAAAGATGGTGTCCAGCATCAACTTCTCTTCCAGGACTTGAGGAccacagccaaaaaaaaaagacttcacATTAGGCAAAGCATAAGTAAAAAGCACTGATAAAAAGGAAAGGCTATTTTTATacagtataatgtatttttataactCGGGGATCCATACTCTTCTGCATGCGGATCACTCTGAAAGCACTTTTCTTCAGTTCAGCTGCCGTGTGCAGATGTGGGCTGTTTTACCCAATTATATATCCCCTGCCCCTTTCTGTTGAAGGTGCCTTCTATGGAAATGCATTACTGGCTTCCACCCAATAACTCCCCAGTCATGTGATTACAGAGTTCAGATCTGGCGAGTTGTCATGGTTTTTCTCACTTTGTTTTCAGCATTGTCAGAGTTGCTCTTTATACTCTGTTAACTGCGTTCATATCCATATTCTTGACTTACGCCTGGAAAATCATGTTCGTAAAAACTCCTTCACTTTATATTTGCAAAGATTCATCCACCCGTGTCAGTAATTATTTGTTATCCGTGATTTATAACTTCTAGTACTGCAAAAGCAATAGATGCAGAAGTTGCATCTCAGTTCTTTTCGTTTGAGAGAACCATCATGCCAAAACATGCCCCGCCGATGTCCTTTTCTTTATCTGAATTTTATCTGCACCACTGCACTTTGACTTGAACAATTAACCTCAAAGTTCGGAAAATGAAGTGCACATGGAACTGCACCTGTATGgtaaaaaaacacttcattaaATAGTTGGTgcaaatgttcttttttttttataaggagAAGAGCAAAAACAGATGGGTTGCAAAATCACAAATCTGGAGCTGTGCAATTACATAAGTTTTGACCTGAGCAGTTGAGAGTTGTTGTTTAAAGGCTTCCACatgtaataatgtttttaagccgactgtactttattttttgtattagtagacatgattgtaaaatatttataccaGTCCAgttctgctttaaaaaagaaCTTTCCACAGAACAAGCACATTTCTCAACACATTTCTGTAATCTGTGATCTGCTCTGCTGTGCAAAATGCTTTTGGTGTTTAGTCTCAGCTTGTTAATCAAGAAGCATCCTAATGAACTCtgattcttaaaatgtaaagaccAGTATGtccccaaaaaaacaataagtgtGTGCATACAGAGTGTCATGATTTGACATCCAGGTAGCAATACACATCCAGCTACGTTCACAGAGAGGAATTCTTGCAGAAGCCACTGAATCTAGTTAATCTTAACTCTGTTCGTCAGACTTAAAAgtagaatatttaatatttctgtcaAGTTAAAAATACAGTTCTACAGTATTCAACTGGAcacattttcttctgctttatAGTGCTTGCTATGCTAAGAAGAAAAGTTGCACGTTTGTATGTCACAAATAATCTTTGTTGCATTACATGTGTATCAGCTTTACATCATATTATATGTAGGTTTCAGATATTTAATGTTAtcatattgcatttaatatttatcCAAATTCACCAGTATTATTAGACATTACATATTCTTTAAAGCAGGTGTTGAATTGTAAACTCAGATATTCCACGTGCAAAGCACCAGTACAGCTTAATCGACTGaaagaaatgttttctgtacatttaacCTCTATATGGCTTTTACATTAGCCATTCATTCAAAGGAATCATTTAAGGTTAAACAAAAAGGGACCCTTTACACTGTAATCTGTTTGTTTCATACCCACTgttgtatattatgtatattttgagtCTGTAACATAGttcacaaataattataatttttgtagTGGAGTGGAATAAATGGTAA

Function

GO: NA

KEGG:

id description
K19680 TRAF3IP1, IFT54; TRAF3-interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161649 lncRNA upstream 6916 15923032 ~ 15924810 (+) True G128941
TU161647 lncRNA upstream 9687 15921674 ~ 15922039 (+) True G128939
TU161646 lncRNA upstream 10152 15921373 ~ 15921574 (+) True G128938
TU161624 lncRNA upstream 45124 15566401 ~ 15886602 (+) True G128919
TU161635 lncRNA upstream 49427 15881355 ~ 15882299 (+) True G128928
TU161684 lncRNA downstream 71255 16022258 ~ 16062179 (+) True G128958
TU161844 lncRNA downstream 938635 16889638 ~ 16892361 (+) True G129071
TU161853 lncRNA downstream 1193187 17144190 ~ 17147069 (+) True G129080
TU162040 lncRNA downstream 1536389 17487392 ~ 17550791 (+) True G129221
TU162082 lncRNA downstream 1740504 17691507 ~ 17692526 (+) True G129255
AMCG00001128 mRNA upstream 131569 15754698 ~ 15800157 (+) True AMCG00001128
AMCG00001125 mRNA upstream 286056 15630714 ~ 15645670 (+) True AMCG00001125
AMCG00001120 mRNA upstream 401767 15525846 ~ 15529959 (+) True AMCG00001120
AMCG00001123 mRNA upstream 407526 15518473 ~ 15524200 (+) True AMCG00001123
AMCG00001122 mRNA upstream 413293 15511511 ~ 15518433 (+) True AMCG00001122
AMCG00001130 mRNA downstream 2712 15953715 ~ 15958009 (+) True AMCG00001130
AMCG00001135 mRNA downstream 38169 15989172 ~ 16002152 (+) True AMCG00001135
AMCG00001134 mRNA downstream 57002 16008005 ~ 16008487 (+) True AMCG00001134
AMCG00001138 mRNA downstream 325432 16276435 ~ 16285796 (+) True AMCG00001138
AMCG00001142 mRNA downstream 335437 16286440 ~ 16290299 (+) True AMCG00001142
TU161504 other upstream 510846 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 757579 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 3920301 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 5777539 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 7311531 8617199 ~ 8620195 (+) True G127134
TU162207 other downstream 2072057 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 2594890 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 2604148 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 2937388 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 3092301 19043304 ~ 19142145 (+) True G129594

Expression Profile