RNA id: AMCG00001133


Basic Information

Item Value
RNA id AMCG00001133
length 717
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00001133
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15912082 ~ 15913139 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGATGTAGAAAAATGGCTGTCATCGAATATCGATTCTAAAGCAGTCTGCAGAAGCGCTACAGGAAAGTGCTTGGCTCTCTGGACTAAGGCAAGCCATTCAAACTTTACTTCAGAGCTTGTGGAGGACATGAACAGCCGAAAACTCATTGTGCCCACAACAACGCGGTGGAACTCATTTCACGATCTGGGGGTTAAATGCATCTCTGACAAGGAGTATCAATTCCTGAGGGAATATTACACAGTCTTGAAGCCCCTCACTGTGGCATTGGACATCTTGCAAGAGGAGGATAACTGCTTCTATGGTACTCTGCTACCAACACTGGAAATCTTGATGACCAAGACACTAGCACTAAAGAATGCCTTCATAAAAGTGATATGCAAAACCAGCAAGTCGCCttatttcaatttcatattGCAGGCAACCAAGATTCGATTTGCATCTATCTTGGAAAGCAAAGAGGCTCTGCTGGCTGCTGTCACATTGCCGAAGTTTAAGCTGCGTTGGTTACGAGAGGAGGAAAGGAGGGACATGGTTAGGGGACTGCTGTCTGCGGAGTGTCGCAGTCTTCCCGAGGAGCAACAGGCAAGGCCTGCCCCAGTGGCCTCAGTCTCCTCCAGTGAAAATGAGTTATTTGCCTTTGATGGGAACGATACAGACATCATATCAGACACAGAAGTGATGGACTATTTAAGTCTGGATTGGGGATGGAGATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161602 lncRNA downstream 352733 15519616 ~ 15559349 (-) True AMCG00001127
TU161603 lncRNA downstream 352733 15554286 ~ 15559349 (-) False AMCG00001127
TU161589 lncRNA downstream 448293 15462717 ~ 15463789 (-) True G128890
TU161518 lncRNA downstream 478942 15364067 ~ 15433140 (-) False AMCG00001118
TU161707 lncRNA upstream 111019 16024158 ~ 16027580 (-) True G128976
TU161795 lncRNA upstream 440296 16353435 ~ 16378315 (-) True G129033
TU161811 lncRNA upstream 607042 16520181 ~ 16574599 (-) False G129042
TU161809 lncRNA upstream 655904 16569043 ~ 16574599 (-) True G129042
TU161837 lncRNA upstream 963172 16876311 ~ 16880485 (-) True G129065
AMCG00001127 mRNA downstream 344822 15557959 ~ 15567260 (-) False AMCG00001127
AMCG00001126 mRNA downstream 365458 15530108 ~ 15546624 (-) True AMCG00001126
AMCG00001124 mRNA downstream 400604 15501816 ~ 15511478 (-) True AMCG00001124
AMCG00001116 mRNA downstream 437114 15463888 ~ 15474968 (-) True AMCG00001116
AMCG00001115 mRNA downstream 451577 15446449 ~ 15460505 (-) True AMCG00001115
AMCG00001132 mRNA upstream 3052 15916191 ~ 15917611 (-) True AMCG00001132
AMCG00001131 mRNA upstream 9252 15922391 ~ 15926770 (-) True AMCG00001131
AMCG00001136 mRNA upstream 114506 16027645 ~ 16102748 (-) True AMCG00001136
AMCG00001137 mRNA upstream 347257 16260396 ~ 16275474 (-) True AMCG00001137
AMCG00001143 mRNA upstream 383889 16297028 ~ 16305683 (-) True AMCG00001143
TU161636 other downstream 2956 15560345 ~ 15909126 (-) False AMCG00001127
TU161519 other downstream 478613 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 731760 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 1313512 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 2552312 13356983 ~ 13359770 (-) True AMCG00001061
TU161965 other upstream 1259731 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 2611753 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 2642691 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 2975626 18888765 ~ 18889757 (-) True G129566
TU162897 other upstream 5334522 21247661 ~ 21270383 (-) True AMCG00001251

Expression Profile