RNA id: AMCG00001140



Basic Information


Item Value
RNA id AMCG00001140
length 1215
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00001140
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 16330869 ~ 16332913 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAATCGCCTAGCAACGCGGTCACGGGTCCGAGGTTCGGAGCGCGCGGACGCCGTGCACGCAGTTAGACCCGCACAGCGCGAGACAGCGGCGCACTCGTGCTCCTCACGAGGCTGGATTTTGCGACAGACACGCAGCGACAGAGATCCGCAGCAGGCCGAGCAAACCGGGACACACTGGCTGCTTGATCCAAGAGTTGGACACGGATTAATAGTGCTCCTGGCGACACTGAAACCCGCCTGCACTCCAGCTGCCAAATACCCTATTAATACCACAATGACTCAAGATTCAGTGGGTCAGGGTTCAGGAGTCTGCGTGCAGAGAAAGATTCTGGATTGGTTTGACAAGTGTGACTCTGCTGGGCTCTCTGAGTCCAGCACCCTGCAACCCAGCAGCCCATCTGACTTGGACCCACAGGTGTCTGGGGAGCAGACACATAGCGGAGGAGGGCCAGAGGAGCCCATTGCGAAGGAGGAAGACGCGCTCACTCGTTCATCCATAGATGCATTTGAGTGCTCAGAGGTCAGCGCCCTGTGCTCCATGGGGATTGAGGACACAGGAATCGGCGCCAGTGCCCACCTCTCCTCTGACAGCGCCGAGCAGGAGAGCCCACGCTGTGGCCCTGCAGAGCTCCCGGCTGCCTGCCAGGATGAGACCGGTGTGGAGCCAGTGGTGAATAGCAGTGCTTTTCACCTGGAAGCTGCCTTTGTGGAGGCGAACTCAGTCACAGAGAGTGTGGGCAATGAGCTGCAGTACAAGTGTGCCGGCTGCCTGCAGTATCACCAGAGTCTGGCCTCCCTGCAGGCCCATCTGACGCAGGGCTGGAGAGAGGGCTACAGTTGTGGGGTTTTCTACCGCACACTGCTCTCAATGCACCAGAGGAGAGGTCAGCAGCACAGGGAGCCGAGTCCCCAGGGCTCCAGGGCTCCCAGCAGCTCCCAGCAGCAGAGCCCACACTGTGGACCTGCAGAGCTCCCGGCCACCAGCCAGGATGAGAGCGGGCTCAGCGATGCCGGCTCCTCGTTCAGCAGTGCGGGGCTGGTTATCAATAACAGTGCTTACATGGACCCTTCCTTTGTGAAGGCCATCTCAATCAGAGAGAGGGTGGGCAATGTGCCGCGGTACAAGTGTGCCGGCTGCCTGCGGTACTACTACAGTATAGCCTCACTGCAGGTCCATATAAACCTGGGTTGGATAGACGGCTACAGCTGCGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU161684 lncRNA upstream 268690 16022258 ~ 16062179 (+) True G128958
TU161649 lncRNA upstream 406059 15923032 ~ 15924810 (+) True G128941
TU161647 lncRNA upstream 408830 15921674 ~ 15922039 (+) True G128939
TU161646 lncRNA upstream 409295 15921373 ~ 15921574 (+) True G128938
TU161635 lncRNA upstream 448570 15881355 ~ 15882299 (+) True G128928
TU161844 lncRNA downstream 556725 16889638 ~ 16892361 (+) True G129071
TU161853 lncRNA downstream 811277 17144190 ~ 17147069 (+) True G129080
TU162040 lncRNA downstream 1154479 17487392 ~ 17550791 (+) True G129221
TU162082 lncRNA downstream 1358594 17691507 ~ 17692526 (+) True G129255
TU162181 lncRNA downstream 1639096 17972009 ~ 17976936 (+) True G129343
AMCG00001139 mRNA upstream 19467 16306331 ~ 16311402 (+) True AMCG00001139
AMCG00001142 mRNA upstream 40570 16286440 ~ 16290299 (+) True AMCG00001142
AMCG00001138 mRNA upstream 45073 16276435 ~ 16285796 (+) True AMCG00001138
AMCG00001134 mRNA upstream 322382 16008005 ~ 16008487 (+) True AMCG00001134
AMCG00001135 mRNA upstream 328717 15989172 ~ 16002152 (+) True AMCG00001135
AMCG00001141 mRNA downstream 13805 16346718 ~ 16354498 (+) True AMCG00001141
AMCG00001147 mRNA downstream 177336 16510249 ~ 16526322 (+) True AMCG00001147
AMCG00001146 mRNA downstream 209226 16542139 ~ 16574462 (+) True AMCG00001146
AMCG00001148 mRNA downstream 503585 16836498 ~ 16852364 (+) True AMCG00001148
AMCG00001149 mRNA downstream 606229 16939142 ~ 16972483 (+) True AMCG00001149
TU161504 other upstream 909989 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 1156722 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 4319444 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 6176682 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 7710674 8617199 ~ 8620195 (+) True G127134
TU162207 other downstream 1690147 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 2212980 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 2222238 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 2555478 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 2710391 19043304 ~ 19142145 (+) True G129594

Expression Profile