RNA id: AMCG00001146


Basic Information

Item Value
RNA id AMCG00001146
length 9390
RNA type mRNA
GC content 0.45
exon number 19
gene id AMCG00001146
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 16542139 ~ 16574462 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTATTAGGCACATAGCTGTAAGATGATAAAGTCCTCCCTGGGGGGGGCTCCCACTAAGAAGAGTTGCAGTCAAACTTTGCTGAACCAAATCAATCCCTGCCCTGCAAAGAGCTGTAGGGAAGGACACAGCACGAGAACCAGGACCTGTCTTCCTGTACACAACACAGGGCTACAGCACTATCTGAGGAGCTTAAGCACTTCTTAAAACGTGGTGCACACACAAGGCCCTCTGGACGGGAGTCTCTACGCCAAAGTCCGTAAGAAGGAGTCCATCGAAGGGACAGTTCCTGCCAACGGCCTCCCAGTAGTCGACCACGCTCTCTCTGTCAGTAGTGACTCGGGGAACTCCACTGCCTCCATCAAAACTGACCGAACCGATGACACAGGCAAGCAGGCTGCGACGGTCACTCAGCCGTTAAGCCcagaggagaagaaagagcTTGACCAACTCCTGAGTGGCTTGGAGGCCCCTATGCATCGTCAGGGTTACTTGGCAGCTTcggctggaggaggaggaggagggggaggtgtGCGCCATTTAGTGCCAGCCCAAGTCCATGTTAACGGGCACAACAGCGCCGAGAGGGAGACGGACATCCTGGACGATGAGCTGCCCAACAGTCAAGAAGCGAACAGTGTCGACAGCTTAGGGACGCTCTCTTCTTTTGAGGGCAGAGCTACGCCCGCCGAGCTCTACTACCCGACCGAGACAGTGATCAATGGGCAAGGCATCACTTACCTGGAGAAGAGCGCCTTGGAGAAAGCACCGGAGATGCCCGGCCAGCGGATCCGGAGCTCTTCTTCAGCTCAGGAGCGTATCATGGACTCCGGCTCGGGCTCGCCCCAGAGCAGCTATGCCAACCAGAACGGCAGCATCTTCCGCTCCCAGTCCTTCGGTGCTGCCGGCGCTCCCAGTATGGACGCTGCACCTAAGTTGATGCCCAGGGCCCCTGCCAGGAGCACCAGCAGTAGAGATGCCGTGCAGAGGGGGCTCAACGTCTGGCAGCTGCATGGACATCCCGAGGAAGGGGCCCTAGACGGGGGTCACTTGAACCCcgccctgcagacacacagcctGCCGGAGTTTCCCCGCACCGCGTCCCAGCAGGAGATTGAGCAGTCCATCGAGGCTCTGAACATGCTAATGCTTGACCTGGACCCGGCCTTGACACAGGTGCCCAAGTCCTACAGCGCCCCGCTCTCCACGGGGCAGGGTTTCACAGGAGAGAACTACGTGGTCACCAGCCAGCCTTCTTTCTCTGAGATCCCAGCCAGACCCTCCTATGTAGCAGACATTTCAAGTCCATCTTACACCACAGATCCCTCTGCCTCCTTCAGTCAACACCGACCTGCTCAACCCATAACCACAGCGGCCCCGAGTTACATAAGCGAGCCGTCTGCCCCATTCAGCACACAGAGGTCTGCCAACACGTATCAGGCCAGCCCTCCACTGTCAACCTACTCAGCTGAACCACACAACGCACTCAGCTACGGACAACAGAGGCCCACCAACACTTACCCAGCAAGCACGGCAGTCCTGACCTACTCACCCGAGCCGTCTCCTGGCACGTTTGGCCAACTCCAGTTGAGGCCCCTCAACACTTACCCACTGAACACTGGATCCTACTCTCCTGAACTGCCGCCGGATCATGAATATCACATCTCCTCTCCATACCTGGGACCCCCGCGGAGCAATAGCGCAGGCGGGGGCAGTGCCTCCTCTTCCCCTTTGCCCCCGGTCAGCACCCAGGCTCCCAAGGAGGTGGAGCCCGAGGAGGAAGGCTACAACCTGGAGGGACTGGTGGCCCATCGGGTTGCAGAATACAACGCTCGAATCAGGGGCATCTGGCAAAGCATGAACCCTCCACAATCCCTCCATCGCCTGCGATCTTACTCCTTCTCCGGCATGCGCTCCCATGGAATGTCGCCCGACGAATCGTCCGCCCCCATGCGCCGCCGGACCACCAGCGAGGGGCAGTACGAGAACGGCCACGACGGAGGCTCGGCCCACGGCACCATGGTCCGCTCCCCGATCCGCTGCGTCTCCCCGGAGGTCGTCAATACCATTTCTGCAAACCCAGGGGGGCGGCCAAAGGAGCAACACATGCACAGCTACAGGGAGGCCTTTGAAGAAATGGACGGGGCTCCTGTCAGTCCCACATCCAGCGGTGGTGGCCGTTCCCCTCCTGGCCTTGCCAAAACCCCTCTGTCTGCCCTGGGACTGAAACCCCACAACCCAGCTGAAATCCTGCTCCATCAGTCTGGCCCTGATGCAGATACTAGTCCTTTAAGTGAAAGTGAGGAAGAACCTCGGAGCTACGTGGAGTCAGTGGCTCGTACAGCCGccggagggggtggggggcaaaCAGGCTCCCCCGTACCCCTCAGTTATGGAGCAGAGAGCCCAGGGAGACACACAGCTCCTTCCCACACCTTCAACTCCCCACTGTCTACCAGCAGCCCCATCCACAGCACTGACGGAAGCCATCCTTCTGGTGACGGTAGCATCCGAATGGGCACTCCCACCCACACCACCGTGGACTCGGGTTTCCGCTCCCAACCTTCAGAAAGCACATACCGCATCCTCACGCCCTCGTTCCCGGGCTCCGCCACCATCACAGGAAGCTATGTTGCTCCCGAGTACAGCCCCTACCAACCCGAAGGTGCTCAGGTCAACGTTATGGGGGTCCACACCGTGCCCGGCAGCCCCCACACCCTACACCGCACAGTGGCTACTAACACACCGCCCAGTCCAGGCCTGGCACGGAGGGCGGTCAACCAAGGCAGCCCTGCCATGGGCCATCACGTGGTGGCAGCAAACGGAAGTGAGACAGGGACTCCCAGCAGCCCTGTCCTGGGCAGGCATCTGTCGGGCAGCCAAGTGGTTTCGGGAAGCCCAAGTTTGGAGAGGCATCTGATGTACGGATACTCCAGCCCTGAAGAGAGACACGGCAACCTCTCACGACAGAGCAGTTCCTCTGGATACCACCCCCCATCCACTCCCTCCTTCCCCATCTCACCGGCTGGCTACGCAGAGAGCTCGGGGGTCCGGCAGGGCAGCCCTGCCCCACAGCCCGTCCTCCCGGAGAAGAGACGCATGTCCAGTGGCGAGCGCCCGAACGGTGTCCTGTCCTACGGCTCGCTGAATGGGAAGATGTCCTCACCTGTGTCGAGTGGGGGCAGTACCCCCAGTGCCTCCTTCTCACACACGCTGCCAGACTTCTCCAAACTCGCCATGTGTGATGGAAGCCCGGAGACAAGGGCCAACGTGAAGTTTGTTCAGGACACCTCCAAGTACTGGTATAAGCCCGATATCTCACGAGAGCAAGCAATCGGTCTGCTGAGAGACCGGGAGCCAGGAGCCTTCGTGATACGGGACAGCCACTCGTTCAAGGGAGCCTATGGCCTGGCCATGAAGGTAGCCTCTCCTCCTCCCACGGTGgtgcagcaaaataaaaaagGTGACAGCACGAATGAGCTGGTGCGACACTTTCTGATAGAGACAAGTCCAAAGGGGGTTAAGCTGAAGGGCTGTCCTAATGAACCTTACTTTGGTTCTCTGTCGGCTCTGGTGTATCAGCACTCCATTACCCCCCTGGCTCTGCCTTGCAAGCTTGTCATCCCAGCCAGAGATCCTCATGATGAGACTCCGGAGATTGCAACCCCCTCGAATTCAGCCTCAGAGCTTCTCAAACAAGGAGCAGCTTGTAACGTGCTTTTCATCAATTCAGTCGACATGGAATCCCTCACCGGCCCACAGGCCATTGCCAAGGCGATTTCAGAGACTGTTGCAGCGAACCCTCTCCCCACTGCCACCATTGTCCACTTTAAAGTGTCCGCTCAAGGCATCACGCTTACGGACAACCAGAGAAAgcTTTTCTTTCGCCGTCACTATCCTATAAATACAGTCACTTTTTGTGATCTGGACCCGCAGGAGAGAAAGTGGAACAAAGCAGACGGAGGCACTGCTAAATTTTTTGGATTTGTGGCCCGGAAACAAGGAAGCACAACAGATAATGTCAGTCACCTCTTTGCGGAGATGGACCCAGACCAGCCCGCCTCCGCCATCGTCAACTTTGTCTCCAAGGTGATGATCGGCTCACAGAAAAGATGAGTTCCTGTGGCACTCCCTTTTTGTTGATCAggaggagtttttttgtttttgtttgtttattttttattgttttgttactttttgtttctttgttttgttacgTTTTTCTTGGAAGGACTTGGAGATGATCCGAGATGGAGGTAGAGAAAGTGCATCATGGGGCAGTGGCAGTGATAGTAATGGTGGGAGATAATATCTATCTTGgcacaaaaaaaaggaagaggaaATGATGTCAATGAGCTTcatttaaaagcaggaaaaagaaaaagcaaagttGAAAAAAGGATACTGAAATCTAACAGGCTTTTGGATTGATTAACCAAAGATGAGAATGGATTTCAATCACGTCTGTCATTAATGAATGGTCCATTTGAAATGAAGAATAtacttatttgtaaaatatgactgctgaaacaggaaaaaaggTTTGCATTCAATGCATTCTTCCAAAGAATATCTGAGAAAATCTGCATGTCCGTTTAGTGTACcagatttatgtatatattgtagtcAGTTCCAAACCCAATAGTTAATAATGTTGGGCCTGTCTGATGAGTGGATGTAAAGGGCtttactataaaaaataaaatgtttgctcCTAAAAATAATAGACCAAATTATAAATTGTTGCAACAACTTTATATACTGTGGTCCaagttatatttgtttatattctcTTAAAGTTCCTGGCTTGATTAGTCAATCCTATAGCACGTAGATTTCAGCAGTCAGAGATGGATTACTCTTGCCTGTGGACACAGGACTCCTGAATGTACTGCAGTTAGCTGTAGTCTCATATTAaggctttgctttgcttttttgaGGGGGCAGTTCCTGAGTGAAATAAGAAAGACATGGCTTCTTCTGATGACACACACTAAGGTGCTCCAGGTTTTAGGAATCTGAATAACACTGGAGAAAGCCCAGCAATGGACAACTGGGTGATTGCACTGTTCTgcatataaaactaaaactataaaCTTGTTGCCTATGTTTAAAGCTACATGTAGTTTTCCCCCTTTCCGAATCTGACAGTCAGTagacttacattatttatgtaattaagtaTGTCAACCTGGCAGAAAACAAACTctataaaataatgcatgataaagaaacttttttttttacttttttagacaaacattttcagaaaccaAGCTTAAACCTCTgaattatgtaataaataaagcCATCAGAGGATGTATGGGTACTCAGGTCACAAAATAGAAACCCAAAAGAAAAGTTAGGAATCAGAACCGTCCAGAGTCCTTTTTGCAGGTTTAGATCgcggttttattttgttataaatattacTCGAACTGAAGGCTGATTTCTGCAGAAGAACCCATGTTTTATAGCCAAGGATCACTGTCCTCTCACTCACAATCACAATTATAGCTATGACATCTTTAGAGAGAAAATTTCCTATCACTGCTCAACAAATGGCCttacttctatatatatatatatatatatatatatatatatcataCCGAAAAGTAAgctaatcaaatatatatatatatataaaaatacaaaagtgactttactaaaatatttattttttgctatgTTGCTCCATGTTAActcatatatacaaatattgtatagtCTACATAAAGATGACCtaaagtatttaaagaaaaaaaaaaaaaaaactattttggcAAAGATTTCAAAATCAACAGGTTTTGAAcagcatttaataaatatataaggtGTAAAGTCTATGTATGTTAAAGCTTGTCactatatgttttaaatatttttcactgctttatttttcttgcctTGTGTTCTTAGATTCCAGTAGGCATGTAAggggataaataataataataaaaagttaattgaaCTGTTCACGGTTTCCCAGGTGTGTGGAAAATGATCTTTTACATGGTTCAGAATCCAAATTCTATACTTACTATAGTGCCACAATTCCTTTTCCTAATTTTTTCATCTgcaagtgaaatatatatttaaatttgaaataagaGAAGGTTTTCATTTGTGCACTTAAACTTTTTGCCCATCTCCATTCAAGGCTTCAAAGCGAGAGCTAGCTGCAGTAATTAGGGGCATGTTGTTTCCCATTCCTCAATTCTGCATTACAACATCAGCAAGATTATAGACACttaattcaaaacaagaaatgtaatattttacttCAGATATCTTTGTAGGCTGATAGAGAACTTACTTCTGCTCACTTTTTTTATAGGCACACGttttgaaaaattacaaattcagGAAATCAATGAAGacagattacattatttataatcacaGTCAAGTATTCATCAACCACAAAGCTATGCAATTAAGATAACGCTTCAATTGTGATCAATTATTGAAAACACCAGACAATGGACAATGCTGGGAAACAGGAGCTGGAAATATTCAGcacataagaaacaaaacactgattttGTCTTAAGAGTGAttggttaaaattaaaaaaagaaaggaaagtaaagcaatctaatttaaaaaggcaagaataaatgtgcttaaaataattgcaaattcCACTTTTTACAGTGTAAGGTGGGGGCTGAGTGTCTGGGCAATCAACAGTAATAGTCAGGGCAATGCAGCAATTTCATTAAAGTGGGTCATAAAATTGTTAACCTTTCTGGAGAGGATGCAGCATTCATTTCTGAGGGGTGAAGATAAATGTTCTGCACAAcccacaaaaaggaaaatatttatcttGCTAAAACATTTTATCTTGGCTTCTCATTTGCTGTTTGAAATTGTTGTGCGCTTATAACGGATGGCAAACAGTGTGGTAGTTTATTACAGAACACCAAACAAATAACACGGCCATGTAAAACTGATTTTCCTTAATCATGAGTTATactgtgtatttcttttgtcgtttgttttcctgttttcctgtttactaaatggctttttttttatctttgtcaTTTGCTGCCACCTTTTGTTATAAACTGGTATTACACACTGTTAGTAGTGAGCAGGTCAATTAGATGTATATGCACTTGTataatctaaaaacaaacatattaaaaaaattacaaaaaaaaaaaaaaaaagttaaaacagtGGTTGCTGAGAAAATGTCTACtgctgtgggaaaaaaaatcaatactaTCTTAGTAATGCAGATTCCCTGCTTCCTGCTCTTttataaggggaaaaaaagtgctGCCAAGTGCTATTGTGATTCTGTATGGCAATCTCTTACATTGATATGTATCTTGCTTTCTGCCCTTCTTTCCCATAAGCAAGATGGTTTACTGAAAACCTGCATTAGTATCAATTGAACTTCTTGGGGTCTCTATTCAATTAAGTTGCAAAAGACTTCTCAGCTCACCTATGCACATGGACATACATATGGTCAACTGACTTAAGCCCTAGAGGAGATAGAGGAGGCCTTGGGATACTGTGCATCTGGGGACACAGAAAGGCACCAGGCCTTGCCGAAAGACAGCGTTCTCTTCTCACTGAACCTCTGAACCCATTACAATCCGTGTAGCTCCCTAAGTATGTTACATCTTTCCTTGGAAGACTGGCAACAGTGTGTCAGGTTGCCAAGAGGAATGTATTTGTACCCAAGCACACCGCTGCAGGCAAATGGACATCACACGCTTTTTAGTTATCCACCGTTTGGCTATGTTTCTGTATGAAGATTCACCCGTGAGGTCAAAATGTTGATACTAAAGTCAAAGGATCCTGTTACAGTCCCACATACTCCagggaaaagaaacaatcatGGAATGGCTACGGCATCGGGGACAAAGAGACTCTAGGCCAAATAAAAACCCAAAGCAAGGGAGACTGGACTGAACTCAATTCAATGTTTCTCTAGTGAATGACTGGATAGCCACTCTGTGCTGTTTTCATCAATATCTAAAGCCATATGTGTCTGAAATATGGGaaaattcaatacaattttgGTATTGCATTGAACCACAGGACTGAACAGAACAACTCTCAAAGTAAAACTGCAAATTGTGGAGGAAAATGGTCTTGGTTCGCAATAGAATggaatattgtatttcaaaccaaaaaaaaagcccaCAATACAAGTGAATGTTTATACCTGTGACAAAAATGAGTCGCATTTGGATCTGTGTGTAAATTGCGCATCAGGCCAAACTAAAACGAGTATTTTTTTAGCCAAAGAATGATTTGTATTCATGCTTGAaggctttatttttctgttcaattGCTTTGTGGggtcatttgtatttgtatagatgacagttctttacttaataaattgtaatttcaCTCAAAATGCTGATATGTTGATATACATTAAATACTgcattatgtttgtgtttgtgtcttctAAGTGGTTTAAACAGGTTCCTGCATTGGATTCTCttgaacacaaataaaaccaatttatccccattaaaaaataaaagcacttacACTCCAGGAAGACATGTTAACAGGACCATAACATACGGGGAAAAACAGTACTAGATAGTTAAGTGTGACTAGCTACTAATAGTAATTGTTACTAGTTTTACAATATTGAAAGCATCACTAGACTTAAATTGTGGGAGTCAGGCcatttgtgttttacttttttcagttCTTAGTCTGGAAAACCAACAACTTCTTAGCAACAATATAGGTAAATTAACTTGGACAGAATTAAGAGTAAGGCTCTTGCATGCTTTTGACTACATTGTTATGGCCAGCATGCACATGCAGTCCCAATCTGCTATGCAACTATATCACTACAGTTGAAATGGTTTTGCTTACAGTTAGTTCCCTTAAAGTCCACTGCAAACATCACTTTAGAGATTGCACCAATTGTAGAGATTGTACTCATAACTGCCTTTATACAGAGAACTTAAATAGTTTACTGGTTCTtgacatgttgaaataaaattatCCATTTCACCAAATGCAGAAatttacatcattaaaaaaagttacaagAGATAGATGCTCTGCTTTTTAAGCTTCCCAGAATAGgaacttttaaaatggtaatcAGTGTTATATCATTCAACCCTCCCAAAATTATTTCTTATCCTTTCTATGATAAAAAAAGATCAACcctgtttctgtatttatataggAAGATAGTGTCTATTTTCTATCCCATGCCTGCTTCTTTCAGACAGCTGTTGACATAGAATGTGTGAATATGCTACCATGGCTGTACAGaccttttgtgtattttcatttgctttatGTTGTATGGCTTtattgtttctgaaaaataaaaaagcaatacagaacagttatattaaaatatacagctgCTTGAAATGAAA

Function

GO: NA

KEGG:

id description
K18080 TNS; tensin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161684 lncRNA upstream 479960 16022258 ~ 16062179 (+) True G128958
TU161649 lncRNA upstream 617329 15923032 ~ 15924810 (+) True G128941
TU161647 lncRNA upstream 620100 15921674 ~ 15922039 (+) True G128939
TU161646 lncRNA upstream 620565 15921373 ~ 15921574 (+) True G128938
TU161635 lncRNA upstream 659840 15881355 ~ 15882299 (+) True G128928
TU161844 lncRNA downstream 315176 16889638 ~ 16892361 (+) True G129071
TU161853 lncRNA downstream 569728 17144190 ~ 17147069 (+) True G129080
TU162040 lncRNA downstream 912930 17487392 ~ 17550791 (+) True G129221
TU162082 lncRNA downstream 1117045 17691507 ~ 17692526 (+) True G129255
TU162181 lncRNA downstream 1397547 17972009 ~ 17976936 (+) True G129343
AMCG00001147 mRNA upstream 15817 16510249 ~ 16526322 (+) True AMCG00001147
AMCG00001141 mRNA upstream 187641 16346718 ~ 16354498 (+) True AMCG00001141
AMCG00001140 mRNA upstream 209226 16330869 ~ 16332913 (+) True AMCG00001140
AMCG00001139 mRNA upstream 230737 16306331 ~ 16311402 (+) True AMCG00001139
AMCG00001142 mRNA upstream 251840 16286440 ~ 16290299 (+) True AMCG00001142
AMCG00001148 mRNA downstream 262036 16836498 ~ 16852364 (+) True AMCG00001148
AMCG00001149 mRNA downstream 364680 16939142 ~ 16972483 (+) True AMCG00001149
AMCG00001152 mRNA downstream 417136 16991598 ~ 16993031 (+) True AMCG00001152
AMCG00001157 mRNA downstream 437400 17011862 ~ 17015601 (+) True AMCG00001157
AMCG00001153 mRNA downstream 477263 17051725 ~ 17121365 (+) True AMCG00001153
TU161504 other upstream 1121259 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 1367992 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 4530714 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 6387952 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 7921944 8617199 ~ 8620195 (+) True G127134
TU162207 other downstream 1448598 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 1971431 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 1980689 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 2313929 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 2468842 19043304 ~ 19142145 (+) True G129594

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000051_01669393_01716229.mRNA True 4850 mRNA 0.47 27 CI01000051 1669326 ~ 1717268 (+)