RNA id: AMCG00001150


Basic Information

Item Value
RNA id AMCG00001150
length 3112
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00001150
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 16857154 ~ 16872727 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCTTAAAGTAATGGTgatattaatgtattcaatgtATAGTTTCAGTACACATAGTATAGTAAGCATTGttcattttcatcctcatcctcctcctcatcatcaGGGGTCATTGCAAGCCCCTGTGAGTTGTTTCTCTTCTCGCTAGATGGCCAAAGGAGATGTTTGCGCCTCTAGAGGAACCTGTCAGGTGATAGGACCCTGCAGAAGCCACTGCGGCGCTTCACCTGTCTGCCCCTCCAGTTACTTTTCCACCTGAAACTGGGCTCAGTCGTTTTCCTCCAGCGCCGCATCGCTACAGCCGCAATGATCTCCTACTTTAGCTGCAGCCTGCTGTTGGCATCGCTGGCATTCCCGGGCACCCTGTTGGCGGAGGTGGTGTTCCGATGCCCCAGCTGCACCGCTGAGCGCCAGGCGGGCTGCCCGAAACTGGCCACCACCTGCGCGGAGATAGTGCGGGAGCCCGGCTGCGGCTGCTGCCCGGTGTGCGCCCGGCTGGAGGGCGAGGCGTGCGGCGTGTACACCCCCCGGTGCTCCAGCGGGCTGCGCTGCTACCCCAAGCCCGAGGTGGAGCTTCCCCTGGAGGAGCTGGTGCAGGGCTCTGGCCGCTGTGGGAGAAGAGTGGACGAGGAGACGACAGGGAGTCCCCACAATGCAGCTGATAGTGGAGAAGTGCAGTACCAGTCTGAGGTGAGCCCGACAGACAACGAACCTGAAGACAGGAACACGAATGGTCCACGGTTAAAACCAAATCCAAAGACTGCAGCCATTCGTCATCATCAATTAGTGCAGGGTCAAAAGTGGTTCAGAATCAAaattcaggaagaaaaaaagctaCGTCCGAAGCTGAGTAAGTGCCAACAGGAGCTGGACAATGTTCTAGAGAGGATTTCCCAGATGCCCTTCAGTGATGACAGAGGACCCCTGGAGCACCTGTATGCGCTACACATCCCCAACTGTGACAAGCGAGGGCAGTATAACTTAAAGCAGTGCAAGATGTCTTTGAACGGGCAAAGAGGCGAGTGCTGGTGTGTAGATCCCCACACCGGAAACCCCATCCCAGAATCCCCTATGGTGAGGGGGGACCCCAACTGCATTCAGTACATCAGTGGGCTGCAGACCGAGCCTCCCGTGGTGCCCCAAAAATAGTGTGTTTTCCAGCAAACCTACAAACACTAGGATTACATAAAGTTATGCAAACACAGATGTGTGTCTATAGTTTTGTTTGGTACaatgtataaacatatacagTCAAACCTCAAGTATATCACATGGAAACGAGAGCCAAGAGATGTGGCATATCAGGTTAAGCAGAGAACAGGAAAGCGGAGGCAAGCCAGCATGGACAAAAGCCCAGatagaaaactttaaataaGGATACAAGACTGAGAGTGTCTTATCCTATTCATAGAGTGTACACTTTAAATAACACAGAGACCAGACACAATTGTCTTTCAAATCTACATCTGGTTGTATAGGTATTTAAGGCAGCCTAGCCCTTCATTTGTGCAGCTGCTATCACTCAAGACAAATTTCTGTTTACTCAACTTTCCCCCTTTGGCTCTTCAGCAAATGTACGCTGTATTTAAGCAAAGCACATTCTATCCTAACAGCCCCCCACACGTTTTTAAACCCTCAAACTGAATAACCGAAATGTCCTTTCAGATTGTAAAGTCTTTCAAAGTTCTTTCTttgaaacataaacatattttgacAGTCTTTCATCACaaccctctcctccctcccttccgCTCCACCAAGTACGTTTCTTCTCACTTTGCTGTCAACATCCCCCTCTTTGCCTTGCACCTCTCATCTCTAAACTACAGTGCAAACCTTGACACGGCTATTGTGCCCAGCGAAAAGAAAAGCGCTGCCAGATTCGTCACTGAGGCTTGTGTTAGAGAATGAACGCACAATGCTTGGCGGCTAAAATAACCCCGTTCCCCAGGCCCCTCTGTACTGTAGAGTCATGTGGCATTTTCCAGGGGAATTACTAATGAAGTGCTGACAGAAAATGAGATTAGGAGAATGGACTTGACACTGACAAATGTGATATTAAGTGGGTTTGActatatataatcaaatgttTGCAAATATGTTTGCGCCATGCTGCCTGACTGTACAACTAGGTCTGGGTTGTAATGAAGAAGCCACCTACTGtctggtgcccaacacctctgAAGAGAAATCACGTTCTTTGCAGGTTCAGGGCATTTTTTAGGGTTAAACTTCAGTATCCTTCCCATCGAGGGAGAACAATTGAATAACTATTAAATTACAGCCCCCTTACAATTCAGTAAACACAAGATCACCATGGAACGTCACTAATGGCTTCATCATTTCAATCCAGGCCCAGACCATATCAATACGTTGAGCCTCCCACCAATTGGCGATTATAGATCCTTTACTTGATGGTGGCTTTTTTGTTTGGTAAAGGATTCTTCCTTGTAAGGCAAACCTACCAACAAGTGCTTATTTTGAATTTTTGATTGAGCTGTTGGGTCCAAGTTTTTATTCACTCAGGGCCCTAATATGTAGAAGATCAGTCTCTAGTTGTATAGATATTTAcgggaataaataaaaaaatgaccaaatttacactgttgttatttgttttctagaTAACTCTGgttatgtttttgttgcagattttttgttgttgttgtttgggggtggggggggaagttggtgtttatttttattatgtcaGCACTtgataatacaatatatttcactgCAGTGAGCTTGGCCTAGTTTAAAACACATCAGGAGCTAATCTCTGTGGTTCAAACATTGATCTGCCAGTACTGTTACAGAGGAAAGTGCTTTCTCCGGATCATTTGGATGTTTTGCTGTTTGGTGTCTTTATCTGTCACTCTtagtgtttcttttattttaactgcattGTTTCAGTGAcggaataataaaaacaaagcatggACAATACTGTACACATCTTTTAGGGAGAACATTTACAAACGGAAAAGTTAcaattagatttatttacaaaattaattttcttttattcacATGTAGTCTGTAGTGACAATGGATAGAAGGCttttattggaaaataaagTAGAAGGCGTAATTCCTTGAGAAAATCCAAG

Function

GO:

id name namespace
GO:0043567 regulation of insulin-like growth factor receptor signaling pathway biological_process
GO:0007507 heart development biological_process
GO:0008156 negative regulation of DNA replication biological_process
GO:0001525 angiogenesis biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0048640 negative regulation of developmental growth biological_process
GO:0040015 negative regulation of multicellular organism growth biological_process
GO:0005576 extracellular region cellular_component
GO:0031994 insulin-like growth factor I binding molecular_function
GO:0031995 insulin-like growth factor II binding molecular_function

KEGG:

id description
K23575 IGFBP2; insulin-like growth factor-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161811 lncRNA downstream 282555 16520181 ~ 16574599 (-) False G129042
TU161809 lncRNA downstream 282555 16569043 ~ 16574599 (-) True G129042
TU161795 lncRNA downstream 478839 16353435 ~ 16378315 (-) True G129033
TU161707 lncRNA downstream 829574 16024158 ~ 16027580 (-) True G128976
TU161602 lncRNA downstream 1297805 15519616 ~ 15559349 (-) True AMCG00001127
TU161837 lncRNA upstream 3584 16876311 ~ 16880485 (-) True G129065
TU161912 lncRNA upstream 50984 16923711 ~ 16995408 (-) False G129125
TU161915 lncRNA upstream 67940 16940667 ~ 16941282 (-) True G129126
TU161913 lncRNA upstream 120274 16993001 ~ 16995408 (-) True G129125
TU162020 lncRNA upstream 458733 17331460 ~ 17331681 (-) True G129213
AMCG00001145 mRNA downstream 457724 16395035 ~ 16399430 (-) True AMCG00001145
AMCG00001144 mRNA downstream 535418 16311684 ~ 16321736 (-) True AMCG00001144
AMCG00001143 mRNA downstream 551471 16297028 ~ 16305683 (-) True AMCG00001143
AMCG00001137 mRNA downstream 581680 16260396 ~ 16275474 (-) True AMCG00001137
AMCG00001136 mRNA downstream 754406 16027645 ~ 16102748 (-) True AMCG00001136
AMCG00001151 mRNA upstream 22116 16894843 ~ 16934576 (-) True AMCG00001151
AMCG00001155 mRNA upstream 125890 16998617 ~ 17000562 (-) True AMCG00001155
AMCG00001156 mRNA upstream 253632 17126359 ~ 17187630 (-) True AMCG00001156
AMCG00001160 mRNA upstream 441338 17314065 ~ 17320529 (-) True AMCG00001160
AMCG00001164 mRNA upstream 567989 17440716 ~ 17486990 (-) True AMCG00001164
TU161636 other downstream 948028 15560345 ~ 15909126 (-) False AMCG00001127
TU161519 other downstream 1423685 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 1676832 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 2258584 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 3497384 13356983 ~ 13359770 (-) True AMCG00001061
TU161965 other upstream 300143 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 1652165 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 1683103 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 2016038 18888765 ~ 18889757 (-) True G129566
TU162897 other upstream 4374934 21247661 ~ 21270383 (-) True AMCG00001251

Expression Profile