RNA id: AMCG00001151


Basic Information

Item Value
RNA id AMCG00001151
length 3822
RNA type mRNA
GC content 0.53
exon number 25
gene id AMCG00001151
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 16894843 ~ 16934576 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGGGGATGAGGACGTGGATCGAAAGAAGGAAAACTGAAACTAAGATTGTGCGTAATAAGAGGCCATTCCACAGCTGCCAGAAACTTTGCAGAGACTATGAGGGGCAACAGCCCTCTCATGCCCTCTTCTCCAATTTGGAGATGAGAGAGGAGTTCTGTAGGATCTGCTCGGGTTATGCCACCCCACAGGTTCACTGGAAACCCAACAGTGAAAGAGAAGGGCTGATCCCAGGACTCCGCGCTTCCCCTGGTGTCCCCTGTCTAAGCATGGCGGCAGGAGGTGCGGCCCCCGGGAGTGATGTGTTTATCAACCTGCATCAGGTTCTAGATGACGTTGAGAAGAGCTCCTCGAATGGACAGGAGGAAGAAAACTGGGAGAAGGCCTTGTCTGTGGAACGATTCGGGGATATCATTTTGGAATCCAGCTCGCGAAACGCTGAGAAAATGGGCCGCTGCTACAATGAGAGGGACTTTGAGTATCACCGTCACACCTTCCATCACACTCACCACCCCTTGTCCACCCACCTCCCTCCAACGCTACGGTTTCGGAAGAGGGTGTTTTGCCTGGATCGCCGCAAAAAGAAGAAACGCAAGAAAAAAAAGACGTCCATCCCTCCCTCTGACATCACGCCAACAATCCAGGAAGTAGATGAGGAGGAGGCGGAGTCTGAGACGGAGGGGCAGGGCCAGGTAGCCACACCCACCGAACAGGCAGACGACAAATCAAAGTTTAGCCTCGGCAGCGAAGACGATTTTGCACCCCCCCTGCCCTTCATGAGTTTCCACATAGAGAGTGAGTGCCCCCCGACCCCCAAGGAGGTTCCCTGTGGCATGACCAAGAGAGGCTGGTTTAGGAGGAAGCCTCTTCACCGGCTCACAGGGGGCCAAAGAGCGAGCTATGACCTTCGAGAAAGGATCTGCATCGGGAGCATGACGGCCATGGAGACTGCTGTCTACCAGAAAGTCCCCACAGATGAGGCTGAGGCCCAGATGCTGGCCAGCGCGGACCTGGACGACATGAAAAGTCACCGATTTGAAGATAACCCTGGAGTGCGGAGACACCTAGTAAAGAAACCATCTCGCAACCAAATAACTCGCACAAGCAACAGCTCCCCTTCTTCATCTAGCctcaagaaaaagaagaagattGACAAGAAGCCCCATGAGGTGTTTGTGGAGCTGAATGAGCTGATCGTGGACAAGAACCAGGACATGCGCTGGAAGGAGACGGCGCGCTGGATCAAGTTTGAGGAAGATGTGGAAGAGGAGACGGACCGCTGGGGGAAACCACACGTAGCCTCCCTCACGTTCCGGAGCCTTCTGGAACTCAGGAGAACCATCACCCACGGGGCCGTCCTGCTTGACCTCGAACAGACAACCTTGCCCGGTATCGCACACCTTGTGGTGGAGACCATGATCATCTCTGATCAGATCAAGGCCGAGGACAGAGCCAATGTCTTGCGGGCTCTGATGCTGAAGCACAGTCACCCCAATGATGAGAAGGATGGGTTCTTCCCACGCAACCATTCGAGCTCCAGCATGACTTCAGTCCAGACCAGCCTCCatcacaaccacaaccacacgCCAGAGACCTGCCTGCCCTTGAAATCAATACATCATCATAGCTCAGACTTGCATAAGACCAAATGCATAAAACTGCTGGAAAAGATACCAGACGATGCTGAAGCTACAGTGGTCTTAGTGGGCTGTGTTGACTTTCTGGAGCAGCCAGCTATGGCGTTTGTGCGACTCAACGAAGCTGTTTTCCTCGAGTCGGTCCTGGAGGTACCCATTCCTGTCCGATTCATGTTTGTGCTGTTGGGACCCAGCCAGTGCAACATAGACTACCATGAAATCGGACGCTCCATCTCTACCCTTATGTCTGACAAGCATTTCCACGAAGCTGCCTACTCTGCGGACGACCGCCAGGACCTTTTGAATGGTATTAATGAGTTCTTAGATTGTAGCATTGTCATCCCTCCTTCTGAAGTGGAAGGCAAGGACCTGCTCAAGTCCGTTGCGTCCTTCCAGAAAGAGATGCTGCGAAAGAGAAAGCAGAGGGAGAATAATAAGTCTGGGCAAAATGTGACGACTGGCCTTGTCCCTGAGGTAAAAGaagtgaGTGTGGAGGAGCGGCCGGAGGAGGTTGAGGACGATCCCCTGAAGCGATCTGGAATCCCTTTTGGGGGGCTCATACACGATATCCGCCGACGGTACCCCCGCTACCTGAGTGACCTGCGAGACGCTGTTCACACACAATGCCTGGCTGCCATTGTCTTCATCTACTTCGCTGCTCTCTCGCCTGCCATCACCTTCGGAGGGCTACTGGGAGAAAAGACAGAGGGCATGATGGGAGTTTCTGAGCTGATTATCGCTACCTCTACTCTGGGTGTCCTGTTCGCGCTCTTTGGTGGACAGCCTTTGCTGATTATTGGCTTCTCTGGACCTCTCTTGGTGTTTGAGGAAGCCTTCTATAAATTCTGCCAGGCCCAGGATTTTGAGTACCTCACAGGCCGTGTGTGGATCGGCTTCTGGCTGGTGTTCATCGTGTTTGTCATTGTGGCGGCAGAGGGCAGCTTCCTGGTTCGCTACATTTCTCCTTTCACCCAGGAAGTCTTCGCCTTCCTCATCTCCCTCATCTTCATTTACGAAACGTTCTATAAACTCTTCAAGGTGTTCAGCGACCACCCACTGTTGAGCTCCTACCCTCCGAACTCGCAGTCTTCCCTGGGGTCAATCAACCTGTCCCAGGTGGCCAGTACCACGGAGTCACTCGTGGGGATGCAGCCCAACACCGCTCTGCTGTCCCTGGTGCTCATGCTGGGCACATTCTTCATCGCCTTCTTCCTCAGGAAGTTCAGAAACAGCAGGTTCCTGGGAGGGAAGGCTAGAAGAATAATTGGAGACTTCGGAATCCCAATTTCAATCCTTTTTATGGTGTTTGTGGACTACTCCATTACAGACACTTATACACAGAAGCTGAATGTGCCCTCTGGTTTCTCCGTTACCTCCCCAGAAAAGCGAGAGTGGTTTATTAACCCAATGGGGAACAAACAGCCTTTCCCCATTTGGATGATGTTTGCCTCTGCAATTCCAGCCCTGTTGGTGTTCATTCTCATCTTCATGGAGACTCAGATCACCACCCTGATTGTCAGTAAGAAGGAGCGCCGTCTGGTCAAGGGGTCAGGGTTCCACCTGGATCTACTACTGATTGTCACTATGGGGGGGATCTGCCCCCTTTTTGGGCTGCCCTGGCTGACAGCTGCCACAGTCCGCTCTGTCACTCACGTCAATGCCCTGACAGTGATGAGTAAAGCAACCGCCCCTGGGGAGAAACCCCGAATCAGAGAGGTGAAGGAACAGAGAGTGACGGGCATGATGGTGGCAGTGCTCGTGGGCCTCTCTATTGTCATGGCGGACGTCCTGCGTCTGATCCCACTGGCTGTGCTCTTCGGGATCTTTCTGTACATGGGTATCACCTCCCTCACGGGGATCCAGCTTTATGAACGCATCATGCTTATGGTCACTCCGTCCAAACACCATCCCGACCACATCTACGTCACCAAGGTGAAGACGCGGCGCATGAACCTGTTCACCTGCATCCAGCTGGGGTGCATCATTGTTCTGTGGGTCGTGAAATCTACAGTGGCTTCCTTGGCCTTTCCCTTTGTCCTGATCATGACCGTCCCCCTCAGACGCTTCATCCTTACCCGAATCTTTGAAGACAGAGAGCTTAAGGCTctGGACTCCGATGAAGGTTCTCCAAATTTTGATGAGGATGGTCAGGACGAATACAACGAGCTGCACATGCCTGTATAG

Function

GO: NA

KEGG:

id description
K13856 SLC4A3, AE3; solute carrier family 4 (anion exchanger), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161837 lncRNA downstream 14358 16876311 ~ 16880485 (-) True G129065
TU161811 lncRNA downstream 320244 16520181 ~ 16574599 (-) False G129042
TU161809 lncRNA downstream 320244 16569043 ~ 16574599 (-) True G129042
TU161795 lncRNA downstream 516528 16353435 ~ 16378315 (-) True G129033
TU161707 lncRNA downstream 867263 16024158 ~ 16027580 (-) True G128976
TU161915 lncRNA upstream 6091 16940667 ~ 16941282 (-) True G129126
TU161913 lncRNA upstream 58425 16993001 ~ 16995408 (-) True G129125
TU162020 lncRNA upstream 396884 17331460 ~ 17331681 (-) True G129213
TU162072 lncRNA upstream 579964 17514540 ~ 17519637 (-) False AMCG00001165
TU162100 lncRNA upstream 776321 17710897 ~ 17712053 (-) True G129273
AMCG00001150 mRNA downstream 22116 16857154 ~ 16872727 (-) True AMCG00001150
AMCG00001145 mRNA downstream 495413 16395035 ~ 16399430 (-) True AMCG00001145
AMCG00001144 mRNA downstream 573107 16311684 ~ 16321736 (-) True AMCG00001144
AMCG00001143 mRNA downstream 589160 16297028 ~ 16305683 (-) True AMCG00001143
AMCG00001137 mRNA downstream 619369 16260396 ~ 16275474 (-) True AMCG00001137
AMCG00001155 mRNA upstream 64041 16998617 ~ 17000562 (-) True AMCG00001155
AMCG00001156 mRNA upstream 191783 17126359 ~ 17187630 (-) True AMCG00001156
AMCG00001160 mRNA upstream 379489 17314065 ~ 17320529 (-) True AMCG00001160
AMCG00001164 mRNA upstream 506140 17440716 ~ 17486990 (-) True AMCG00001164
AMCG00001167 mRNA upstream 552821 17487397 ~ 17496135 (-) True AMCG00001167
TU161636 other downstream 985717 15560345 ~ 15909126 (-) False AMCG00001127
TU161519 other downstream 1461374 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 1714521 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 2296273 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 3535073 13356983 ~ 13359770 (-) True AMCG00001061
TU161965 other upstream 238294 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 1590316 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 1621254 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 1954189 18888765 ~ 18889757 (-) True G129566
TU162897 other upstream 4313085 21247661 ~ 21270383 (-) True AMCG00001251

Expression Profile