RNA id: AMCG00001156


Basic Information

Item Value
RNA id AMCG00001156
length 8697
RNA type mRNA
GC content 0.52
exon number 35
gene id AMCG00001156
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17126359 ~ 17187630 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTAGGGGACAGCAACAGCTGCAAAAGCATTTAACGGTCTTCCATGAACAATGACACTTGGGGTGTCTCAGAACTAAGCGACACAAGAGACTGAGCGAGTGGGGAACTGCCGTACGCAAAACGAGAGCGGTCGGgtgaaaaagaaagcaacacAGGCGCGCCACACCTCACAAGATGGACTGACGGAAAGCTAGGAGCAACTAAAGGCAACAAGTGACTGGAATAAAGAAAGTGGGAAAAGAAGAATGTAAATTATACAACATATGTAATTACGGAGGAGACGAAGGTTAGATAAGAGGAGGGAAGGGAGAGTACAGACACGGAGGGCAGGGGGTCAATCTAATTAGATACATCGGTGCCACCTCAAAGTAATAGACACAGAGGTTAATCTCCTCTTCAACCCTGGAGGAACTTTCAAAGAGCATTGCACGCTTCCCTGGCAAATGACTGAAGAAGCGGCCACTTGAGGGTTACTGAGAAGAGTTATCTCCTCTCAGTCTGCGAGCGAAGTGTTACACGGCAGTGCGAAAGAGGAAGCACTGTGGCTTTGGGTGTGAGGTGAAGCTGGCAAACAAGCAGAGATGGATGTGTTTGGTGGTGCCCCACGTTTCCTGGCATATCCTCGGCCTGTGGTGGTGCAGGGCGGCACTGATGCAGTCCTGAAGTGCCAGATTGGTGGGGATCCCCGGCCAGCTGTCATCTGGGAACGAAACAACGAGCAGATCCACCCTGACGGCCGCTATCGTCTTTTTGAGGACGGCAACGTCTACAACCTTATCATCTCAAGTGTGGATGCAGAGGATAGTGGACAGTATATCTGCAAGGCCAAGAATAGCATTGGGGAGACCTACGCTGCGGCAACTCTGAAAGTGGAGGGAGAGGCTCAGGAAAGGGAGCTGCGAGAGGAGAACAAGCCCCGTTTCCTCATCAAGCCTCTCTCCACTCGGGTCGGCCGCGGGGACGACGCCGTCTTCTCCTGCAAACTGTGGGGCAAACCCCGGCCGGAGGTGACCTGGGAGAAAGATGGCAAAAAACTGAATGACATTTTTGAGAGTACTCACTTTACCGTGGGGTACCAGGATGGGGGCTGGTTCCAGCTGAAAATCTTTAAGACCCGAGCGCCCGACGGTGGGGTTTACACCTGCCGTGCCAGGAATGAGTACGGAGAGGGATTAGCTGGAGCGGTCCTACTCGTGGATGCTGGGCCTGCGCACGAGGAGGAGGCGACTCGCAATGGGTACGCCAACGGCCACTGGAAGCCGCAGCAAGGCAAGCCGAGAGGGGGACGGCAAATCGCCACGCGGCAGAAGGAAGACCCAGTGCCCCACACCGCCAAGGTGAAGATGTTCGCAGTGTCTGAAGGCAAGCACGCCAAGTTCCGCTGCTACGTCACAGGCAAGCCCAAGCCAGAAATCATCTGGCGGAAAGATGGCAGGCTGATAATGTCTGGGAGGCGTTACCTCTTATATGAAGACCGGGAGGGCTACTTTACCCTGAAAGTGCTCTACTGTAAGCAAGAGGACAATGGATTATACGTGTGCGCCGCCTCCAACACGGCAGGGCAAACTCTTAGTGCGGTCCATCTCACTGTCAAAGAGCCACCAGTGCGGTTCAAGCAGCCCCTCTGTGACTTAGAGGTGTGGGAGAGGGACCTGGCCGTGCTGGAGTGTGAAGTCCCCGAGGACTCAGTCCCAACCACCTGGTACCTGGAGGACCGGCGTCTGCATCCAGGAGACAAATACGGCATGGAGCAGTGGGGAACAATGCGCCGCCTCACCATCCGAGACATGGGAGCAGATGACGATGGCATCTATCTGTGTGAGATGGCCGATGGAGGGAGGAGCATCGCTGAGGTGTCTGTGCGAGGTACCATTGTACGCAAGCTTCCCCGAAAAGTGGATGTATTAGAGGAAGAGAACGCTGCTTTCTGTGTGGAGGTCGAGGAAGAAGAAATGGACATACACTGGTACAGAAATGGGATAGAGCTTCGAGAGACACACCAGACCATCATCAAGTCCTTCGGCAAAACCCACATTCTTGTCTTTGTGAATACCTCCCCACAAGACTCTGGACTTGTGACCTTCGTAGTGGGCAGATCGAAGACTACATCGCAGCttagggtcagagCCGCCAGGCATTCCCCTCCCAGCTGCCCCGTTGGTGTTCAGATGAACACAGAACGTGCCAATGCAGCTCTGCTCTCCTGGGTACCTGCTCATGACTCACGCAAGAACCCCCCGGCTGGCTACGTACTAGAAAGGCAGGAGCTGGGCTCACAGGAATGGCTGCAGTGCCTCACCACCGACACCGCCACCGCGGTCGAGATCCTGGGAGACAGCGTGCCGTGTGAGGAAGACTACCGCTTCCGTATCTGTAGCGTCAACAAGTACGGTCGCAGTGGCCACGTGGACTTTCCAGGGGCTGTCCACCTTGTCCCAGTGGCTCGAATACAAACCCCCCTACAGGATGCTCTAGTACCAGAGGGCCAGGATGCAGAGTTTTCCATTGAGCTCTCTGCCTCAGTCATGGGGACCTGGTTTTTGAACGGCACACAACTCCAGGAGGGTGAAAGGTTCTCGATGCATCGCTCACGATCGCACCATTCTCTGTGCATCCGAGACGTGCACAACACTGACAACAGGTCCGAGATCACCTTCATTGCCTATGGAGTCAGGGATTCAGCAGCACTATACATTCAAGAGATGGACCGAAATAAGGCAGTTGAGGCTGGAAGTCcgattgtgctgtactgtgagCTTTCAGATAACTCTGCCCAGGTCCATTGGTACAAGGATGGAGTGGAACTACACCCAGATGAAGGTCTCCACATGCAATCAGAAGGCACCATGAGGAGACTTGTCATTCAATCAGCAGAGTTCTCCCATTCTGGCATTTATAGCTGTGATGCTATTGATGATGTCATAAGATTTCATGTGAAAGTTGAAGTGAGGTTCACATCTCCTCCTGAGGTTGAGAGGAACAAGTCCATTGAAGCAGGCTGTCCCATTGTACTGCACTGCGAGCTCTCAGACCCCACAGCCCTGGTCAGCTGGTACAAGGATGACATTAAGCTCCTCCCACTGAGTGGCACAGACATCCAATCAGAGGTAAGAAACTTCATTTTTCTCAGAAGCCAAGCCACTgacattttgttctttaaatcGATTAAAACACCCCTAGCTCCACCTGTGCGGTTCACACCTCTTCCTGAGGTTGAGAGGAACAAGTCCATTGAAGCAGGCTGTCCCATTGTACTGCACTGCGAGCTCTCAGACCCCACAGCCCTGGTCAGCTGGTACAAGGATGACACAAAGCTCCTCCCACTGAGTGGCACAGACATCCAATCAGAGGGTACCGTGAGGAGACTGGTCATCCAATCAGCAGAGCTTTCTCACTCTGGGGCGTACAGCTGTGTTGCTGTGGATGATGTCATACATTTCAAGGTGGATGTTAAAGCTCGACAAGTGATGGCCACACCTCTTCCTGAGGTTGAGAGGAACAAGTCCATTGAAGCAGGCTGTCccattgtactgcactgtgagCTCTCAGACCCCACAGCCCTGGTCAGCTGGTACAAGGATGGAAAGAAGCTCCTCCCACTTGATGGCATAGACATCCAATCCGAGGGCAGTACAAGGAGACTGGTCATCCAATCAGCACAATGTTCTCACTCTGGGGCGTACAGCTGTGATGCTGTTGATGAGGTCATTCAATTCAAAGTGGATGTTGAAGTGAGGTTCACGTCTCTTCCTGAGGTTGAGAGGAACAAGTCCATTGAAGCAGGCTGTCCCATTGTACTGCACTGCGAGCTCTCAGACCCCACAGCCCAGGTCAGCTGGTACAAGGATGGAACAAAGCTCCTCGCACACAGTGGATTAGACTTCCAATCAGAGGGCAACCTGAGGAAACTGGTCATCCAATCGGCTGAGTTCTCCCGCTCTGGGGTGTACAGCTGTAAAACTGCTGATGATATCAGTGAATTTTATGTGGATGTTAAAGTCCCTCCTGTCAAGTTTGTTGAAGTCCCTGACGTGGATCTTCACAAGAGCGTAGTGGAATCTGAACCTGTAGTTCTGTACTGTGAGCTTACAAGACCTGATGTCACAGTGCAATGGTATAAAGATGGAGTGGAAATACAAACTGATGACAACATTTCTGTGCAAGCAGAACAAAACATGAGGCGACTTATTATTCAGTCAACCAACCTGTCAGATTTAGGCATATACACTTGTCGTGCAGGAGAGAGCGTGCTGATTTTCAAGGTTAATGTAAGAGagCCACCTGTGGGCATAGTCCATCCAAAGGAGGACGTCCACCTTGACCgtcatgtttctgaagaaattgTTCTGAGCTGTGAGCTTTCACGCTCCAACGCCACTGTGCATTGGTACAAAGACGGACATCAGATAGAAGAAAGTGGTAACATCAAATTTAAGGCTGAAGGCCCTTACAGAAGACTTGTTATCCTCCACGGTACCACCAAAGATTCAGGAGAGTACGTCTGCGATACTGCAGATGACTCTATTTTCTTTCAAGTTAACATAACAGAACCAGCAGTCCACATAGTCTCCCCCAACCAATCCCCTGTTGAACTCAATCAACTGACCTCAGAGAGACTGGTATTAGGCTGTGAAGTTTCCAGAGCTAATGCAATAGTACGCTGGTATCGAGACGGACTTGAGGTGGAAGAGAGTGACAACCTGATCTTGGAAGTTGAGGAGGCCCATAGGAGACTAATTATCCCCAAAACGACTGTCCTAGACTCTGCTGAATTTGTATGTGATGCTGTGGATGACTCAATGACCTTTCATGTGAAGATCACAGAACCCCCTGTGAAGTTTGTGCACCCCAAAAAAGCTTCTGGCACAGTGAAGGGCTTCGTTGGGGAACCTGTGGTGCTTGAGTGTGAGGTTTCCCGCTCAAATGCTGTGGTGTGCTGGAAGAAGGAAGGAGTGGAGGTGGAAGAGAGCAGGCGCATCAGCATCATTGAAGACAGAGTTCTCCGCCAATTAACCATCCACTCTGCCAAGTTGGAAGACTCCGGACAATATATCTGCGATGCCAATGATGAGACAATGGACTTCAAAGTTAAAGTCACTGAGCCTCCAGTGCAAATATTAAGGAAAGGAGAGTTGAAAACACAACAGGAGTTCCAGGTGTCCGACGATGTCGTGCTGGAGTGTGAGCTCTCCCGAGCCAACGCCATGGTCAAGTGGTACAAAGACGGAGAGAAAATCATAGACAATGACCGCCTCTGCATGGAGGTGGAAGGAGCTTTCCGCTCACTGGTCATCCTGAATGCAGAGATCTCTGATTCAGGAGAGTACTTCTGTGACGCCCGAGATGACAATGTTGTCTTCCATGTCAGTGTGaaagAGCCACCAGTGTCCATTCTAGGGAACTCTGACAGCCCAGAGCACCACAGCCTGGTGGCAGGGGACGATCTTGTTTTGACATGTGAAGTGTCCCGACCCAGCGCCTCAGTCCAGTGGTACTGGAACAAGAAGCTACTGAACGCTGACTCCCGGACTCGCATTGAGAGCCAGGGCACAGTACGACAGCTTGTCATCTCTGGCCTCTGCATCTCAGATGCTGGGGAGTACGTCTGTGATGCCATCGATGACAAAATGGTTACGATGGTGAAGGTGCAAGAGCCACCCATTACCTTCCTGAACAAAGAAGATGGCAAAGAGCCCATACAGGTTGTGGAAAATGAGAGTGTCACGCTGTGTGCCCGGGTGTCGAAGGAAAGCGCGCCGGTGCAGTGGCTGAAGAACTGGAAGAATGTCAGCGGAGAGCGCTTCAGTAGCAGCAGTGATGGGAAATCGCGACTCTTCAGTATCCAGCAGTTGCAGCTGTCCGACAGTGGAGTGTACACATGCGATGCCTACACTGATGAAATGCACTTCACGCTTCAGTTTGAACGCAAGCAGGAAAAGGCAGAGGAGGTGTTTTCCATGGAAAACGAGAGTACGGTGATGTCGGCAATAGTGTCGAGCGGGAAGAGCGTGGTAAAGTGGTTCCGCCACCGGAGCCAGATCACCGACAGTGAGAAGTACGAGACGAGGGTGGAGGGCAGAGTTCACAGCCTTATTGTGAAGAAAACCAATAAGGAGGACTGTGGCCTGTACACCTGCGTCTCACATGACGACGAGATGGTATTCGTTGTTAGTGTGAAAGAGATGAAACTGAACTTCGCGAGGATGCTGGAGGATGTTTACGCCCACAAGGATGACACCATCATACTGCGTTGTGAGCTCTGCAAGCCCAAAGGAGATGTGCTGTGGCTGAAAGATGGCCAGGAGATCATTCCCAGCCGCCGGCTAGTCATGAGGGCGGAGGGCCGCGAGCGTTCCCTGACGATTCACCGCTCAACGGGGGATGACTCCGGAGAGTACACCTGTGAATCCAAGGATGACAGAACGTGTGCCCAAATCACAGTGGAGATGCCTCGTGTGGTGGAGTTCGTGGCAGAGTTGCACAATGTGACAGTATTGGAAGGAGAAGATGCCACATTTAAGTGCGTTGTCTCACCAGAGGATGCAGATCTCGTGTGGTACAGAAATGGCAAACCCATCATTCCAAATGAGAAGTTAATTGTGTCCAGAAATGGCCTGTGCCATATGCTGAACATCCTGAACTGCCAATTGTCTGACATCTCCAAAGTGACAGCAGAAGCAGAAGGAGTATCATCAAAAGCCAACCTTAAGGTGCAAGAGGCACAGGTGGTGTTCACAAAGAAACTGGAGGCCGTGGTGGCTGAGGAGCACAGCGAGGCCACTCTGGAGGCGGAGGTGAGCCTGGAAAGTGGGGAGGTCCAGTGGATGAGGCAGGGCCTGGTCATCCAGCCTGGACCCAAATTCACCCTGAAGCAGAACGGCAGAAAACGCAGCCTAACGGTTCACAACCTCACCTTCTCCGACCGAGGCACCTACCGTTGCGAGACGCTACACGACCGCACTCAGGGCAAGCTGAATGTCGAATCTAAATTTATGCACTGGCCTTCAAAATCTAGGGTGGTGTCATCAACTAGAAAAATCTCCATCCGGAAAGGACTGACCGATATTGAAACTTTTGAGCGGGAGACGGCCTCATTTGAGGTCGAGCTCTCCCACACAGACGTGAAGGGGGTGTGGCAGAAGGACGGCATTCGCCTCAAACCAAACAACCGCTGGCGAGTGAGTGCCAACGGGCAAGTGCACAGCCTCACACTACCAAACCTCACACTGGAGGACACCGGCACCATCACCTTCTGTGCAGAGAGCGTGAGGATGTCAGCCAGGCTTACGGTGAAAGAGCCACCAGTGACGTTCTTAAAGAAACTGGAAGATGTGCAGATTGCAGAGGGCTCGGGCGTCTCGCTGGAGTGCGAGCTGTCAAGGCAGAATAATGGAAATGAACTGAAACCAGGGAAGAACTATCGCATCTACTCCATGGGGAGAAAGAGGTTCCTCCAGATCACAAAGTGTGTGACCATGGATTCAGGGGTTTACACCTGTGACGCTGGGGATGCCAGCCTGACCTGTGCCCTGGAGGTCTATGAGCGGGATGTGGAGGTAATACAGGGCCTGGAAGATGTGGACATCGAGGAGGATCAAAATGCTGTATTCATGTGTGAGGTATCAGAGGATGTGCCAGGGGAGTGGTTTAAAAATGGAGAGCGAATCAAGCCCACCAGCACCATCAAGATTCGACAGGAAGGGaccaaacattttcttctgatGTGTAACGTGAAGGCAGATGACTCCGGAGAAATCAAGTTTGTTGCCAAACAGGCTGAATCCACGGCCAACCTAGATGTGGAAGAGCCGCCAGTGACGATAGTGAAGCCCCTGAGAGACAAGACCGCCCTGGAAAAGCATCGCGTAATCCTGGAGTGCACCGTGTCCAACCCTCGATCCAGTATCCGCTGGTATCAGGGTGAGACCTTGATCCTGCCCTCTGAACGCTTCGAGATCTGCAGTGAGGGCTGCTATCGCAAGCTGGTCATTCACCAAGTGATGCTTTCGGATGAGGGGACCTACAGCGTCCAGGTTGGGGAGCATCAATCTTCAGCGAGGTTGATGGTTGAAGAGCAGGCAATCCTGATAGTCCGGAACCTGGAGGACGTGGAGGTGACGGCGCCGGAGGAGGCAAGCTTCGAGTGTGAGGTCTCCGTCCCGGTCATCAAATCGCCCATCTGGAGTCTGAATGGGGAGCCCGTGCAGCATGGGAGGGAAGCACGGCTGGAGAACTTGGGCACCGTGCACAGACTCACCCTGAGGAAGACCAGTACAGAGATGAGTGGGATCGTCAAGTTTACTGCTGGCAAAGCCCGGAGTAGTGCTAAGCTTAATacgtttgttctatttaaaaaacatTCTCTCAAAGAAAGGGATGAGATCAAGCAGCTCTGTATCGGACATGTCATCGAACCAAGAGGCTACGGGCACCTGAGAAGGAccagagaaaatGCGGCTCAGGTCCTTGACATAGTTGCCCCGGTGGAACACACAGGACTCTCGGAACAGACGGCTCCGGAACGCCCCCCACTTGTCCAACAAATCTGCCACGGGGTCCGCATACTttgcccttatccagggcgtgCACAGATTGCACAGATTTTGTTCCTAGAAGCAGAGGAGGACCTGAGACACTTCCATGGCCAGATAACCAGGTTACTAGATCAAACAGCTCCAATGTCTCGCTGTTTTTAA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161912 lncRNA downstream 130951 16923711 ~ 16995408 (-) False G129125
TU161913 lncRNA downstream 130951 16993001 ~ 16995408 (-) True G129125
TU161915 lncRNA downstream 185077 16940667 ~ 16941282 (-) True G129126
TU161837 lncRNA downstream 245874 16876311 ~ 16880485 (-) True G129065
TU161809 lncRNA downstream 551760 16569043 ~ 16574599 (-) True G129042
TU162020 lncRNA upstream 143830 17331460 ~ 17331681 (-) True G129213
TU162072 lncRNA upstream 326910 17514540 ~ 17519637 (-) False AMCG00001165
TU162100 lncRNA upstream 523267 17710897 ~ 17712053 (-) True G129273
TU162101 lncRNA upstream 523267 17710897 ~ 17761905 (-) False G129273
TU162114 lncRNA upstream 591286 17778916 ~ 17782649 (-) True G129286
AMCG00001155 mRNA downstream 125797 16998617 ~ 17000562 (-) True AMCG00001155
AMCG00001151 mRNA downstream 191783 16894843 ~ 16934576 (-) True AMCG00001151
AMCG00001150 mRNA downstream 253632 16857154 ~ 16872727 (-) True AMCG00001150
AMCG00001145 mRNA downstream 726929 16395035 ~ 16399430 (-) True AMCG00001145
AMCG00001144 mRNA downstream 804623 16311684 ~ 16321736 (-) True AMCG00001144
AMCG00001160 mRNA upstream 126435 17314065 ~ 17320529 (-) True AMCG00001160
AMCG00001164 mRNA upstream 253086 17440716 ~ 17486990 (-) True AMCG00001164
AMCG00001167 mRNA upstream 299767 17487397 ~ 17496135 (-) True AMCG00001167
AMCG00001165 mRNA upstream 326756 17514386 ~ 17521270 (-) True AMCG00001165
AMCG00001163 mRNA upstream 335822 17523452 ~ 17537225 (-) True AMCG00001163
TU161636 other downstream 1217233 15560345 ~ 15909126 (-) False AMCG00001127
TU161519 other downstream 1692890 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 1946037 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 2527789 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 3766589 13356983 ~ 13359770 (-) True AMCG00001061
TU162350 other upstream 1337262 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 1368200 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 1701135 18888765 ~ 18889757 (-) True G129566
TU162897 other upstream 4060031 21247661 ~ 21270383 (-) True AMCG00001251
TU162985 other upstream 4422677 21610307 ~ 21648508 (-) False AMCG00001264

Expression Profile