RNA id: AMCG00001160


Basic Information

Item Value
RNA id AMCG00001160
length 1404
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00001160
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17314065 ~ 17320529 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGactgaaaaagaagaaatggagaaggaggaggaggaggccccACCGGCAGACCAGGCCAAGGAGCCGCACACCTGGAACTGGTCGGTCATCTACCTGTGTTTCTATGGGTTCATGGTGACCAATGAGATCACTCCCGTGCTCTCCTACTCCTACATGGCTGTTCTGGTGCCCGTGTTCTTGCTGACGGACTATGTGCGCTACAAGCCGGTCCTCATCCTGCAGAGTCTCAGTCACATCTCCATCTGGCTCATCTTGCTCTTGGGCACCAGCCTGCTGCAGATGCAGTTCATGGAGTTCTTCTATGGCATCACTATGGCGGCCCGGGTGGCCTACTCTTCATACATCTTCTCCTTGGTCACGCCAGCCCTGTACCAGAGAGTGGCCAGCTACTCGCGGTCCTCAGTGCTCATGGGAGTGTTCACCAGCTCAGTCCTGGGCCAGCTCTGCTTCTCCGTGGGTGGCGTCGACTACTCCACCCTCTGCAAGATCTCCCTGGGCTTCGTGATCTTTGGCTTATGCCTGTCCATCTGCCTGCCATGGCCTAAGAGCAGCCTGTTCTTCAACAGGGTGGCAAAGGAAAAGGCCGCCTTAGATGAGCTGGACAAGATGAACCCAGGCGGCCCCTTGCCCATCCCTGCGGCGCCGGTGTCGGGCTGGAGGAACTCTGTGTTCATCCAGATGCTGAAGGAGCTCCTGCATGTGGTGAAGATGCCCCAGCTGCGTCTCTGGAGCCTCTGGTGGATCTTCAACTCGGCAGGCTACTACCTGATGGTCTACTATGTTCACATACTTTGGAATGAAGTCTACCCAGGGGTTGAGAACAGAAAAGTTTATAATGGGGGAGTGGATGCGGCCTCGACTCTGCTAGGTGCCATTGTGTCATTCGcagcagggtttgtgaagatcCGCTGGAAGTTATGGTCAGAGCTTGTGATTGGCATTATAACTGGGATCCAGGCCGCCCTGCTGCTGCTCATGACCACCACGTCCAACATCTGGGTGTGCTACGTGGCGTACGCCCTCTTCAGAAGCTCCTACCAGTTCCTTGTGCCTATTGCCATttTCCAGATTGCTTCATCCCTAACAAAAGAACTGTGTGCCTTGGTTTTTGGAGTTAACACTTTTCTAAGCACCATTCTCAAAACCATTATCACAATCATCGTTTCAGACAAGAGAGGCCTGGGCATGGCAGTACACAGCCAGTTTCTGGTTTACTTCGGTTACTTCACGCTGCTGACCATCGCTTACTTCGGAAGTGCGGCCTATGTCATCATAAAGCATTTCCGCAATGAGAGAGGAGACGGCAGTACGGAGGAGAATGGAGCCACCGAGTTGCGTAGTACTCAAACTGACATCCCTGAAGTAGACAGACTGGCCAATGGCTGCAGTGTTAAGGTCTGA

Function

GO: NA

KEGG:

id description
K14609 SLC19A1, RFC1; solute carrier family 19 (folate transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161912 lncRNA downstream 318657 16923711 ~ 16995408 (-) False G129125
TU161913 lncRNA downstream 318657 16993001 ~ 16995408 (-) True G129125
TU161915 lncRNA downstream 372783 16940667 ~ 16941282 (-) True G129126
TU161837 lncRNA downstream 433580 16876311 ~ 16880485 (-) True G129065
TU161809 lncRNA downstream 739466 16569043 ~ 16574599 (-) True G129042
TU162020 lncRNA upstream 10931 17331460 ~ 17331681 (-) True G129213
TU162072 lncRNA upstream 194011 17514540 ~ 17519637 (-) False AMCG00001165
TU162100 lncRNA upstream 390368 17710897 ~ 17712053 (-) True G129273
TU162101 lncRNA upstream 390368 17710897 ~ 17761905 (-) False G129273
TU162114 lncRNA upstream 458387 17778916 ~ 17782649 (-) True G129286
AMCG00001156 mRNA downstream 126435 17126359 ~ 17187630 (-) True AMCG00001156
AMCG00001155 mRNA downstream 313503 16998617 ~ 17000562 (-) True AMCG00001155
AMCG00001151 mRNA downstream 379489 16894843 ~ 16934576 (-) True AMCG00001151
AMCG00001150 mRNA downstream 441338 16857154 ~ 16872727 (-) True AMCG00001150
AMCG00001145 mRNA downstream 914635 16395035 ~ 16399430 (-) True AMCG00001145
AMCG00001164 mRNA upstream 120187 17440716 ~ 17486990 (-) True AMCG00001164
AMCG00001167 mRNA upstream 166868 17487397 ~ 17496135 (-) True AMCG00001167
AMCG00001165 mRNA upstream 193857 17514386 ~ 17521270 (-) True AMCG00001165
AMCG00001163 mRNA upstream 202923 17523452 ~ 17537225 (-) True AMCG00001163
AMCG00001166 mRNA upstream 224054 17544583 ~ 17593861 (-) True AMCG00001166
TU161965 other downstream 140388 17172870 ~ 17173677 (-) False AMCG00001156
TU161636 other downstream 1404939 15560345 ~ 15909126 (-) False AMCG00001127
TU161519 other downstream 1880596 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 2133743 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 2715495 14592699 ~ 14598570 (-) True G128628
TU162350 other upstream 1204363 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 1235301 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 1568236 18888765 ~ 18889757 (-) True G129566
TU162897 other upstream 3927132 21247661 ~ 21270383 (-) True AMCG00001251
TU162985 other upstream 4289778 21610307 ~ 21648508 (-) False AMCG00001264

Expression Profile