RNA id: AMCG00001163


Basic Information

Item Value
RNA id AMCG00001163
length 3063
RNA type mRNA
GC content 0.36
exon number 7
gene id AMCG00001163
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17523452 ~ 17537225 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGGAGGCAGTCAGGTGAGAACAACAGGAAAAGTTTGCAGTTTGGCTGTGAGAGGATTCGCTAATAAAAGTATACGCGGGGGTAACTTATTATATAgggtacttaaaaaaaaaaaaaaaatatatatatatatatagcttacAATATCTGTGAAGGTCTAGTGCCAGTTCCGGACAGTTTCCCTTCCTTTTAAATCTGGTTACTCTTTATCTTAGTCTGTGTGGGGGTATTCGCTGGAGCAATAGGAACAGAGCAAGAAGCCTTGGCGGACACATCCACTACAGACAGAAACGGTGATCATGGCCGGACTGAGGACCGCGGTGGCCCTGGtggtctgtctttctctcatTAACCTGGCCACAGTCTTGTCTCAGACCACGACCCAAGCTCCCGAGATACCCTGTTCTACCTATTCCAACAGCAGTTGTGAGCAGTGTCTGAAGAATGTTAAGTGCCTGTGGTGTAACCTCAATCATCAATGCATCGATTACCCTGTGAGGAGCCTCGTGCCACCCAGTTCTGTGTGCCCCCTGAACTCGGCTCGATGGGGGCTCTGCTGGGTGAACTTCCAGGCATTGATCATCACCATGTCTGTAGTAGCGGGGATCATTCTTATATCCATTatcatctgctgctgctgctgttgcaaGTGTGAAAAAGGGGGTCTTGCTAAGATGGATGCGAAAATGACGCGCCAGTCTGAGCAGAGGAAGGTGCGCCAGGCGGAGAGGAAAGTTGAAATGCAGATGAGGCACGATGAGATCAGGCAGAAGTATGGTTTGACAAAGGATAACCCTTACTCCAAATTTGAGAACAATTAAACTGCATTACTTCCCAAGAGGATCCTATGTAGAGCTAAACTTTTATTCCATGGTTGTACAATCCCCCAAACTCTACtgacttcattatttttctcttgttaaacagaataggaaaaataagccaaatatcacattatattaaatattataactgTTTTTGGCGATGCTAAATCTACCATATAACTTTATGCATATGTATTGACTCATATATATAACTAACTGTTAGTTTAAATAGAGATTGGCTTGACTGTTGACTTGAGTTAAAGATATATTTGCCTAGAGGTGTGATACTGACCTTGTTCAATTTATTAGAGATCCCATTCGTAAAGCTGCTTTTATATGTCACTGCTAATTTGGTCTCCCCAGCTGTTTTGTATAGATGTACataactgtatttttaccaTCAAATTCTGAAATCTATCTGATCAAATATATGACTTGATTGAAAAATACTAATGTTTAACAAGAGAATAAACTGATGTCACTGTCACTAGTGGCTTTCCTTTGTAGTACCAgcaaatgatcaaatatttttgtgtgctgcaaaaaaaaaattcccgCCGTGACACAGACTTTGAGACATTGCTCTTGTAAAGGTCTTGTAACAGGTTTATGTGCATGAAAGACATCCttgaactttaaaataaaagttactgTTTCATAGTCTTCTCTAGTAAAGGTGTTTTAGTTACAGAAATAGTGGCAAAATCTGTATGAAAACAATTCTGATATATACAATCTGATAATCCATGTAAAACCTGCATTTTTATCAATCCTCCACTTAACAAAATTATAAAGTATTTGAAAGCGTTTAGATGTATTTTTCCTTGGAAGTAAACTgatcaatcattttattttttattctttacataTTTTAGTAAAGCTCATTCTGAACTAGATTGGACATGTTGCCTTTTAATATCCCTAATCTAAATCCCCTTTGTTCCATTCCATTTGACAAACCAATGATGACATAGTGGAAATTGAGATATTAATACTTGTCATTCCATGCAAGACTGCTCAGTGAGACCTGTTTTCATATTTCCTATGCAGCAACTGAAaccatttgaaaatatgaagaatGCTGAAATGCTTTAATATGCGGTACTTGATTGATTAACGTTTATTTAGCCAATCAGTTATTTCGTAGTTCTGCCAATATTGCCCGTAACTCTTCTGTGAGGCAAATATTATTGGGCGGACACTAAATAGTTAGTCTGTGACAATATATGAACTCCAAGTAGGTTGCCTATGCCACAGAAATGACAGGAACTATCAGATTTACACTATTAAAACACTCTGCTGAATTACAGCCAGGCTGCACAGCTCAAGGTGCTTCTGGTCACTTCCTTTAAGTGACTTTCCTACATTGAGCTCCGTCACTATTTAATTGATAGTCACTCATTCCTGCTGTTGAATGACTAGTAAGCTGAAATAGAGGATGCTTTCTTTGCTGCCTCATGAGAAGGTGCTAAACCGTGTAATCTTTTATCATTTACAAAGCATCTCTGCACTGACAGTTTTGTTAAAGTTTGtgctatatatttatgtaaagtCTTGCTTTTTGGTTGTggcctaattaaaaaaaaaacaaaaaaaatgtgatattcACATAATatccaatacataaataaataacatgatatTCATACTGTAAAAGTCTGTCCTGGCGTTTTCTCACAacccacatttaaaaatgtaaaaatgaatatacattttccatccATTAAGACAGCAGCGTggttaacacaaaaataaactccAGATGTTACCCAAGTCTGCATGCATATGCTTTTCATGTAATAATGAACCTGTCTGACTGTCACTCTGACTTTAAGAGTAAATAATACTGACAagacttgttttttgttattaatttctgCTTCAGTGAAGTATTATCacattctcattattattattattattatcacaaatattattatatagcaTTACACTCCTTATTCtgataaaaaatgcattgcCTTCTGTTTAGGGCACTGAGtttcatattttctaaaatCATCTTTGATAGGCAAATCTGAGCatgcatttaacaaaatgttaaacaaaatgttatgtCATAACTGTATGTCATACTTGTATATTCACTGTACAGAGGTGATTGTTCTACTTAAAGTGACAAATTTAAGTAGTTTTtttcaatgtgatttttaaatattttcacttcATCTAGGAAACAAACTTTGTTGTTCAAATAAAGTgacaatattgaatattgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162072 lncRNA downstream 3815 17514540 ~ 17519637 (-) False AMCG00001165
TU162020 lncRNA downstream 191771 17331460 ~ 17331681 (-) True G129213
TU161912 lncRNA downstream 528044 16923711 ~ 16995408 (-) False G129125
TU161913 lncRNA downstream 528044 16993001 ~ 16995408 (-) True G129125
TU161915 lncRNA downstream 582170 16940667 ~ 16941282 (-) True G129126
TU162100 lncRNA upstream 173672 17710897 ~ 17712053 (-) True G129273
TU162101 lncRNA upstream 173672 17710897 ~ 17761905 (-) False G129273
TU162114 lncRNA upstream 241691 17778916 ~ 17782649 (-) True G129286
TU162197 lncRNA upstream 434784 17972009 ~ 17976917 (-) True G129358
TU162213 lncRNA upstream 519915 18057140 ~ 18057666 (-) True G129370
AMCG00001165 mRNA downstream 2182 17514386 ~ 17521270 (-) True AMCG00001165
AMCG00001167 mRNA downstream 27317 17487397 ~ 17496135 (-) True AMCG00001167
AMCG00001164 mRNA downstream 36462 17440716 ~ 17486990 (-) True AMCG00001164
AMCG00001160 mRNA downstream 202923 17314065 ~ 17320529 (-) True AMCG00001160
AMCG00001156 mRNA downstream 335822 17126359 ~ 17187630 (-) True AMCG00001156
AMCG00001166 mRNA upstream 7358 17544583 ~ 17593861 (-) True AMCG00001166
AMCG00001172 mRNA upstream 191773 17728998 ~ 17729801 (-) True AMCG00001172
AMCG00001171 mRNA upstream 219853 17757078 ~ 17768452 (-) True AMCG00001171
AMCG00001176 mRNA upstream 269008 17806233 ~ 17856789 (-) True AMCG00001176
AMCG00001179 mRNA upstream 440612 17977837 ~ 17989616 (-) True AMCG00001179
TU161965 other downstream 349775 17172870 ~ 17173677 (-) False AMCG00001156
TU161636 other downstream 1614326 15560345 ~ 15909126 (-) False AMCG00001127
TU161519 other downstream 2089983 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 2343130 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 2924882 14592699 ~ 14598570 (-) True G128628
TU162350 other upstream 987667 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 1018605 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 1351540 18888765 ~ 18889757 (-) True G129566
TU162897 other upstream 3710436 21247661 ~ 21270383 (-) True AMCG00001251
TU162985 other upstream 4073082 21610307 ~ 21648508 (-) False AMCG00001264

Expression Profile