RNA id: AMCG00001165


Basic Information

Item Value
RNA id AMCG00001165
length 1970
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00001165
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17514386 ~ 17521270 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTAAACCGGGTTTTCGTTGCGCTGCCAAGAAACCGCCACCAGGAAGTGTTTGCGTCCCTGACGTCACAAGGTGAAGATCTGCTAGACACCCCCATAAACAAACCGCGCGGCGTTTAAATCCAGGTATTGTTATTGTCGGGTGTTGTGTTTCGTTATGGTTAAACGATGTGTGGTCAACTTTTGCGTGAACTCCAATCAGAGTGGACACAGTGTGCATTATTTCCCCAAAGACCCCACACTAAGGCGACTGTGGGTCAAGTTTGTTCAAACAACAAGAAAGGACTTCCTCCGGGCGACGCAATACTCTCTGATTTGTGGGAAGCACTTCACGCCCGACAGCTTTGCAAATGCCTTGGAAGTGGAGATGGGGTTTACAAAGAAACGCAGGTTAAAAGCCACTGCCGTACCCACTATACAGCCTGAGcgaaatgaagagaaaagaaaacgaGCCCGAAGAAAGCCTGCAAAGAAGAGGGGCAGACAGAGGGTCTCTGTGCACTGCGAGCCGCTGTGCTCCCCAGCGGCCTCACCTGCAGAAGCCCAGAATGAGCCGCAGCCGCTGGAAATCACTCCAGTCAAAGAAGCAGTGAAAACTGAGAACGACCACATTAACCTCAAGGTGGCGGGCCAGGATGGCTCTGTTGTCCAGTTCAAAATTAAAAGGCACACCCCCCTCAGCAAACTAATGAAAGCGTACTGCGAAAGACAGgGTCTATCAATTAGACAAATTCGATTCAGGTTTGATGGTCAACCCATCAATGAAACGGACACACCTGCGCAGcttgAGATGGAGGACGAAGACACTATTGACGTATTTCAGCAGCAGACTGGTGGAGTGTGTTAAAGCTGTATATCCCTCCTAACAGAGGACTGTGgacctggagaaaacccactTTACTAAACTCTtctgttaatttgtttattttgttttcctccgaATACGCTATCATTTCCCCCCCTCTTGGTAAACCCTGACTGTATTACAGGGGACAAGATTTGAGTGTGAACAAGTTGTGAAAAAAGGGAATAATTTTAATTGGTAACCAAGACTCGCTGGGAACAGTGGATGCTTTAAACAGACGCCTTGAGTGCACAAATGAAAAGGCGCTATACAGGCGATCATGATTTTATGGTTTCCCTTTAGAAATTGACTGTGTGATGAACCTGGGAGGTGTCAGAGGATGTGGAGGTAAAGAATGAAGCCAATTTCTGTATCTGTGAGGTACTAAAACTCACTCTTTCAGGTGTACGTTCAAAAAGAGCCCCGCTGTACGTTTCGTGCGATAGATTCATTTTTAGGATTGCCATCCAGATTGAATGAATAATTGAAAGCAGCAGTTCTTATTCTGGATGAGAAATAATGCTGGGGTTTGTTGGCAGACAAACTGGTAGACAGACACCATATACTTTGCAGATGATTCTTGAAGTAAGAACCcactttaaatcaaattcaggtttattttataGTAACATCTTAATGAAGACAAGATATTATTGCCTGTATTAAATCTAAacctctgtttttctttgaggTAATGGGGGGGAAGTGAACTTGACAGTTTTAAATAGCCATTTGTAATtgactgagtttttttttttttttttttttttttttcttccaccccCCCAGCAACCTTTTGTATTGTGGCAAAGAACTGGGTGATTTCCCTCACATTAAACCTGaaagaattttatttttttcctttaaatgtcATTGTTCAAAAGAACTGCTTCATCAGCTTGCATTCTGAGAGTATgtcctatttttgttttttttgttaattttgttttccttttttttctgcatctttTTCATTGGGGTGGGAGGGAGTTGGGCAAGGTAGACAATTCCACTGATTCTGTCATGTTTCTCTACTGatttgtacattatttgttGTCCTTTACTactgtatacaataaatatagtTTGGTACTCAGATTGCTTGTCAGGagtaatgatttattaaaa

Function

GO:

id name namespace
GO:0016925 protein sumoylation biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12160 SUMO, SMT3; small ubiquitin-related modifier

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162020 lncRNA downstream 182705 17331460 ~ 17331681 (-) True G129213
TU161912 lncRNA downstream 518978 16923711 ~ 16995408 (-) False G129125
TU161913 lncRNA downstream 518978 16993001 ~ 16995408 (-) True G129125
TU161915 lncRNA downstream 573104 16940667 ~ 16941282 (-) True G129126
TU161837 lncRNA downstream 633901 16876311 ~ 16880485 (-) True G129065
TU162100 lncRNA upstream 189627 17710897 ~ 17712053 (-) True G129273
TU162101 lncRNA upstream 189627 17710897 ~ 17761905 (-) False G129273
TU162114 lncRNA upstream 257646 17778916 ~ 17782649 (-) True G129286
TU162197 lncRNA upstream 450739 17972009 ~ 17976917 (-) True G129358
TU162213 lncRNA upstream 535870 18057140 ~ 18057666 (-) True G129370
AMCG00001167 mRNA downstream 18251 17487397 ~ 17496135 (-) True AMCG00001167
AMCG00001164 mRNA downstream 27396 17440716 ~ 17486990 (-) True AMCG00001164
AMCG00001160 mRNA downstream 193857 17314065 ~ 17320529 (-) True AMCG00001160
AMCG00001156 mRNA downstream 326756 17126359 ~ 17187630 (-) True AMCG00001156
AMCG00001155 mRNA downstream 513824 16998617 ~ 17000562 (-) True AMCG00001155
AMCG00001163 mRNA upstream 2182 17523452 ~ 17537225 (-) True AMCG00001163
AMCG00001166 mRNA upstream 23313 17544583 ~ 17593861 (-) True AMCG00001166
AMCG00001172 mRNA upstream 207728 17728998 ~ 17729801 (-) True AMCG00001172
AMCG00001171 mRNA upstream 235808 17757078 ~ 17768452 (-) True AMCG00001171
AMCG00001176 mRNA upstream 284963 17806233 ~ 17856789 (-) True AMCG00001176
TU161965 other downstream 340709 17172870 ~ 17173677 (-) False AMCG00001156
TU161636 other downstream 1605260 15560345 ~ 15909126 (-) False AMCG00001127
TU161519 other downstream 2080917 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 2334064 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 2915816 14592699 ~ 14598570 (-) True G128628
TU162350 other upstream 1003622 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 1034560 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 1367495 18888765 ~ 18889757 (-) True G129566
TU162897 other upstream 3726391 21247661 ~ 21270383 (-) True AMCG00001251
TU162985 other upstream 4089037 21610307 ~ 21648508 (-) False AMCG00001264

Expression Profile