RNA id: TU162072


Basic Information

Item Value
RNA id TU162072
length 1359
lncRNA type sense_over
GC content 0.40
exon number 4
gene id AMCG00001165
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17514386 ~ 17521270 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCGACAAGGCGCGTTCTCGATCTGGCGGAGACGGCTGGGAGAGGTGTATCAAACAGATCTGCGCTAATAAATCCGCACACACAGCTCGCAAAACCGGCAGCATGTCTGAAGAGAAGCCAAAGGAAGCAGTGAAAACTGAGAACGACCACATTAACCTCAAGGTGGCGGGCCAGGATGGCTCTGTTGTCCAGTTCAAAATTAAAAGGCACACCCCCCTCAGCAAACTAATGAAAGCGTACTGCGAAAGACAGgGTCTATCAATTAGACAAATTCGATTCAGGTTTGATGGTCAACCCATCAATGAAACGGACACACCTGCGCAGcttgAGATGGAGGACGAAGACACTATTGACGTATTTCAGCAGCAGACTGGTGGAGTGTGTTAAAGCTGTATATCCCTCCTAACAGAGGACTGTGgacctggagaaaacccactTTACTAAACTCTtctgttaatttgtttattttgttttcctccgaATACGCTATCATTTCCCCCCCTCTTGGTAAACCCTGACTGTATTACAGGGGACAAGATTTGAGTGTGAACAAGTTGTGAAAAAAGGGAATAATTTTAATTGGTAACCAAGACTCGCTGGGAACAGTGGATGCTTTAAACAGACGCCTTGAGTGCACAAATGAAAAGGCGCTATACAGGCGATCATGATTTTATGGTTTCCCTTTAGAAATTGACTGTGTGATGAACCTGGGAGGTGTCAGAGGATGTGGAGGTAAAGAATGAAGCCAATTTCTGTATCTGTGAGGTACTAAAACTCACTCTTTCAGGTGTACGTTCAAAAAGAGCCCCGCTGTACGTTTCGTGCGATAGATTCATTTTTAGGATTGCCATCCAGATTGAATGAATAATTGAAAGCAGCAGTTCTTATTCTGGATGAGAAATAATGCTGGGGTTTGTTGGCAGACAAACTGGTAGACAGACACCATATACTTTGCAGATGATTCTTGAAGTAAGAACCcactttaaatcaaattcaggtttattttataGTAACATCTTAATGAAGACAAGATATTATTGCCTGTATTAAATCTAAacctctgtttttctttgaggTAATGGGGGGGAAGTGAACTTGACAGTTTTAAATAGCCATTTGTAATtgactgagtttttttttttttttttttttttttttcttccaccccCCCAGCAACCTTTTGTATTGTGGCAAAGAACTGGGTGATTTCCCTCACATTAAACCTGaaagaattttatttttttcctttaaatgtcATTGTTCAAAAGAACTGCTTCATCAGCTTGCATTCTGAGAGTATgtcctatttttgttttttttgttaattttgttttccttttttttctgcatctttTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162020 lncRNA downstream 182859 17331460 ~ 17331681 (-) True G129213
TU161912 lncRNA downstream 519132 16923711 ~ 16995408 (-) False G129125
TU161913 lncRNA downstream 519132 16993001 ~ 16995408 (-) True G129125
TU161915 lncRNA downstream 573258 16940667 ~ 16941282 (-) True G129126
TU161837 lncRNA downstream 634055 16876311 ~ 16880485 (-) True G129065
TU162100 lncRNA upstream 191260 17710897 ~ 17712053 (-) True G129273
TU162101 lncRNA upstream 191260 17710897 ~ 17761905 (-) False G129273
TU162114 lncRNA upstream 259279 17778916 ~ 17782649 (-) True G129286
TU162197 lncRNA upstream 452372 17972009 ~ 17976917 (-) True G129358
TU162213 lncRNA upstream 537503 18057140 ~ 18057666 (-) True G129370
AMCG00001167 mRNA downstream 18405 17487397 ~ 17496135 (-) True AMCG00001167
AMCG00001164 mRNA downstream 27550 17440716 ~ 17486990 (-) True AMCG00001164
AMCG00001160 mRNA downstream 194011 17314065 ~ 17320529 (-) True AMCG00001160
AMCG00001156 mRNA downstream 326910 17126359 ~ 17187630 (-) True AMCG00001156
AMCG00001155 mRNA downstream 513978 16998617 ~ 17000562 (-) True AMCG00001155
AMCG00001163 mRNA upstream 3815 17523452 ~ 17537225 (-) True AMCG00001163
AMCG00001166 mRNA upstream 24946 17544583 ~ 17593861 (-) True AMCG00001166
AMCG00001172 mRNA upstream 209361 17728998 ~ 17729801 (-) True AMCG00001172
AMCG00001171 mRNA upstream 237441 17757078 ~ 17768452 (-) True AMCG00001171
AMCG00001176 mRNA upstream 286596 17806233 ~ 17856789 (-) True AMCG00001176
TU161965 other downstream 340863 17172870 ~ 17173677 (-) False AMCG00001156
TU161636 other downstream 1605414 15560345 ~ 15909126 (-) False AMCG00001127
TU161519 other downstream 2081071 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 2334218 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 2915970 14592699 ~ 14598570 (-) True G128628
TU162350 other upstream 1005255 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 1036193 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 1369128 18888765 ~ 18889757 (-) True G129566
TU162897 other upstream 3728024 21247661 ~ 21270383 (-) True AMCG00001251
TU162985 other upstream 4090670 21610307 ~ 21648508 (-) False AMCG00001264

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU166967 True 1477 lncRNA 0.37 5 NC_053123.1 15507013 ~ 15573848 (+)
tiger barb (Puntius tetrazona) TU101615 False 1229 TUCP 0.41 4 NC_056707.1 8431145 ~ 8433483 (+)