RNA id: AMCG00001169


Basic Information

Item Value
RNA id AMCG00001169
length 1053
RNA type mRNA
GC content 0.64
exon number 3
gene id AMCG00001169
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17724248 ~ 17725586 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTTTGATGACACCTGGCACCCAGCTACCCACCCCTCGGGGGCAGTACTTCCTGCCCTGTTGGCTGTCAGTGACATGTTGCCCAGCTACAGCAAACCCAGTGGGCTGGACTTCCTGTTGGCTTTCAATGTGGGCATTGAGGTACAGGGCCGGCTGATGAGGTTCTCCAATGAGGCACAGAACATCCCCAAGAGGTTCCACCCCCCCAGTGTGGTGGGCACCCTGGGCAGTGCGGCAGCCTGTGCGCGGCTACTGTCTCTGGAACGCACACAGTGCTGCCATGCCCTGGCGATCGCGGCCTCCTTGGCAGGTGCCCCCATGGCCAACGCAGCTACGCAGACCAAGCCGTTGCACCTGGGCAATGCAGCCAGGCTGGGTCTGGAGGCGGCGTTGCTGGCGTCTCGTGGGCTGGAGGCCAACGCTCAAGTGCTGGATGCTCTGCCTGGGGTCGCCGGTTTCAGCGCCTTCTACGAGGACTATGTCCCACAGCCACTGCACCCTCCTGAAGACAGGGACCTGTGCTTCCTGCTGGAAAATCAAGACGTGGCCTTCAAAAGCTTCCCTGCACACCTGGGCATGCATTGGGTGGCGGAGGCGGCGGGCTCGGTGCATGAGCTGCTGTACATCAACCGGCCCTTCCCCACGTCCGAGCACCAGGCACGCCACTCCTTCCAGTTCAGCGCCTGCTCCACCCTGCTGGACGGGGAGGTCACGCCGAGCTCCTTCTCCCCCGCCACCCGGCGGCGACCCGAGCTGCACGCCCTGCTGTCCCTGGTGCGAGTGGAGCACGCTCCCGATAATCCTGCCAACTTCGACCGCATGTATGCAGAGGTCCATGTCACTTTGGTGGACGGCACCGTGCTGCAGGGGCGGTGCGACACTTTCTATGGGCACTGGCGCCACCCGCTGAGTGCCGACGCCCTGCGCAGGAAGTTCCGTGCCAACGCGGGTGCTGTGCTGCCGGAGGAGCAggtggaggagctgctgcaggcaGTGGAGGGGCTGGAGCAGCTGGAGAACTGCACCTCTCTGCTCTCTTGCTTGCATTGA

Function

GO:

id name namespace
GO:0019543 propionate catabolic process biological_process
GO:0047547 2-methylcitrate dehydratase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162082 lncRNA upstream 31722 17691507 ~ 17692526 (+) True G129255
TU162040 lncRNA upstream 173457 17487392 ~ 17550791 (+) True G129221
TU161853 lncRNA upstream 577179 17144190 ~ 17147069 (+) True G129080
TU161844 lncRNA upstream 831887 16889638 ~ 16892361 (+) True G129071
TU161684 lncRNA upstream 1662069 16022258 ~ 16062179 (+) True G128958
TU162181 lncRNA downstream 246423 17972009 ~ 17976936 (+) True G129343
TU162309 lncRNA downstream 829565 18555151 ~ 18557104 (+) True G129442
TU162310 lncRNA downstream 829565 18555151 ~ 18557104 (+) False G129442
TU162442 lncRNA downstream 1071264 18796850 ~ 18802040 (+) True G129552
TU162443 lncRNA downstream 1071264 18796850 ~ 18802040 (+) False G129552
AMCG00001162 mRNA upstream 302382 17421069 ~ 17421866 (+) True AMCG00001162
AMCG00001161 mRNA upstream 326229 17384589 ~ 17398019 (+) True AMCG00001161
AMCG00001159 mRNA upstream 415662 17297142 ~ 17308586 (+) True AMCG00001159
AMCG00001158 mRNA upstream 427570 17270011 ~ 17296678 (+) True AMCG00001158
AMCG00001154 mRNA upstream 581261 17125328 ~ 17142987 (+) True AMCG00001154
AMCG00001170 mRNA downstream 21464 17747050 ~ 17755669 (+) True AMCG00001170
AMCG00001168 mRNA downstream 47359 17772945 ~ 17782621 (+) True AMCG00001168
AMCG00001175 mRNA downstream 67807 17793393 ~ 17804682 (+) True AMCG00001175
AMCG00001174 mRNA downstream 132766 17858352 ~ 17866887 (+) True AMCG00001174
AMCG00001173 mRNA downstream 146931 17872517 ~ 17880389 (+) True AMCG00001173
TU161504 other upstream 2303368 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 2550101 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 5712823 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 7570061 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 9104053 8617199 ~ 8620195 (+) True G127134
TU162207 other downstream 297474 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 820307 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 829565 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 1162805 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 1317718 19043304 ~ 19142145 (+) True G129594

Expression Profile