RNA id: AMCG00001173


Basic Information

Item Value
RNA id AMCG00001173
length 1983
RNA type mRNA
GC content 0.51
exon number 18
gene id AMCG00001173
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17872517 ~ 17880389 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGAAAGCGCAATACAACGCCGAACCGATCTGGACCAGACGGACGGACAGGTGCCCATTTTGTCCTGGATTTCTGGGATGTATGAATGGATAGTTAACGGCTTCACGTCGCTCTTGCACAACAGCAGGCAGAAGTCGGGGAGCCGGCCCGGGAACGAAAGCGTGCCGAGTGGCGCCGCGACTCCCTCTCCAGCGCAGCGGCAGAACAACCACATCAGCCCCGCCAAGAGGAACTACCAGAGTATCCAGGGTCCAGACGGCACCTGTGAATATTTGGAGATTAAAAGACCCAGAAGAGATGGTGTTGTCAGTGCTGTCAAGAAAAGATTGACGGCCGCTGCAGGCTTTTTCAGGTTCCACAGTCCTCTGACTGCATCTCGCTCTGAAAACCAGAAGGCCAACGGCACCGATCAGGTTCATCCAGAAGTATCTTCTGGTGTCAATGACATTCAAAACAACACTTTcaataattacaacaacagAATGGAGCTGAAGTTAGAAAATAAAGTCGAAACTGGAAGCAACAATCCAGAGAAGACCTGGGAGAATGTGCATCTGAAAGCGGCACAGattatgacaaaacaaaaTGTGGGAGACCCACACACGTGCAATGCAGACAAGAACAGATACAGGAACCCCCGGCGATCTCTGCAGCTCCTGCCGACTGGACTGCCACGGTGCGGCACCCTCCTGTCCACAGAAAATCCATCCGGCCAGGGCCACAAACCCTGCCTGGCAGTGGAGGAGGATCTTAAAGAAAGTGGCAGAGAACAATACAGACTTTTAGTGGAGATGGTATCTGAGAAATACTCAACACATCAACAGTTGCCCTTCAGCAAGGCCAAACAGTATATATCTTATCAACCTAAGCATTTGAAGCCAGTCGTTCGAAACGGAACTTGCGACGCTTCAGCCGCGTTCATGCGAATGAGAGCCAAACCCTGTGCTTCAGTGTGGACAGATGACTGCATGACAAGGCACAACCAAGATGGAAGGGTTCAGGTCAACTTCCGCAGCTCCTTTAAAGACTGTGAAGAAAGGAGAGTGGAAGGCCAACCGGGGGAATATAAAATGGTGGAAGATTTGCTGGCAAAGCCTGACGAGAGGCAGGCCAGCTCGACATCGCTGCGCGTCAGCTCTGATCCAGATAATCCTGCAATGAAACCGAAACTACCCGTGGACTTGGACCTGTCTGCAGAGGTTGCGAAGCGATTGAACCTGGTGGACCGTGAGCTGACCATTTCTGCCCGACCTCCCATCTCCCATTCCCAACAAGCTGCCCAGAGCCACCGTGATTCAGAGGAGTTCCCGAAGTTTACGCAGgaaATGGAGCAGGATATCCGTAAAGCATTGGGCCACAGTAACCCTGATACAGTCGTCAGCAGTGCCTTCAAGCTGAGGATAACGCAGAGAGACCTCAGTACGCTGAGAGACCACAGCTGGCTCAACGACGAGGTAATCAATTTCTATATGAACCTCCTGATGACCCGTAGCGAGCAGGAGGGGCACTGCAAAGTCTACGCCTTCAGCACCTTTTTCTTCAACAAGCTGTGCTCGGGGGGGCACCAGGCAGTGCGGCGCTGGACCAAAGCAGTGGACTTGTTCGAGAAGGACATTGTTCTGGTGCCCTTGCATTTGGGAGTGCACTGGTCTTTAGCAGTGATAGACTTCAGAGTCAAGACTGTGAATTATTACGACTCCATGGGCCAAAGAAAAGATGACATTTGCAGACGTTTACTGCACTATCTAAAAGAAGAGTTCAAGATTAAGAAGAACAAAGATCTGGAAGTTTCCAAGTGGACGGTGGCCAGTGCCAAGTCAACAGAGATCCCTCAGCAAAACAACGGTAGTGACTGCGGGGTGTTTGCGTGTAAATACGCCGATTACATTGCACGAGGGTGGCCCCTCACTTTTACACAGCGCCACATGCCCTACTTCAGAAAGAGGATGATGTGGGAGGTGGTGAACCAGAAGCTGCTGTGA

Function

GO: NA

KEGG:

id description
K03345 SENP2, AXAM2; sentrin-specific protease 2 (axin associating molecule)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162082 lncRNA upstream 179991 17691507 ~ 17692526 (+) True G129255
TU162040 lncRNA upstream 321726 17487392 ~ 17550791 (+) True G129221
TU161853 lncRNA upstream 725448 17144190 ~ 17147069 (+) True G129080
TU161844 lncRNA upstream 980156 16889638 ~ 16892361 (+) True G129071
TU161684 lncRNA upstream 1810338 16022258 ~ 16062179 (+) True G128958
TU162181 lncRNA downstream 91620 17972009 ~ 17976936 (+) True G129343
TU162309 lncRNA downstream 674762 18555151 ~ 18557104 (+) True G129442
TU162310 lncRNA downstream 674762 18555151 ~ 18557104 (+) False G129442
TU162442 lncRNA downstream 916461 18796850 ~ 18802040 (+) True G129552
TU162443 lncRNA downstream 916461 18796850 ~ 18802040 (+) False G129552
AMCG00001174 mRNA upstream 5630 17858352 ~ 17866887 (+) True AMCG00001174
AMCG00001175 mRNA upstream 67835 17793393 ~ 17804682 (+) True AMCG00001175
AMCG00001168 mRNA upstream 89896 17772945 ~ 17782621 (+) True AMCG00001168
AMCG00001170 mRNA upstream 116848 17747050 ~ 17755669 (+) True AMCG00001170
AMCG00001169 mRNA upstream 146931 17724248 ~ 17725586 (+) True AMCG00001169
AMCG00001178 mRNA downstream 10094 17890483 ~ 17897403 (+) True AMCG00001178
AMCG00001180 mRNA downstream 20661 17901050 ~ 17902506 (+) True AMCG00001180
AMCG00001177 mRNA downstream 71208 17951597 ~ 17971233 (+) True AMCG00001177
AMCG00001181 mRNA downstream 109487 17989876 ~ 18011937 (+) True AMCG00001181
AMCG00001183 mRNA downstream 132069 18012458 ~ 18024201 (+) True AMCG00001183
TU161504 other upstream 2451637 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 2698370 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 5861092 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 7718330 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 9252322 8617199 ~ 8620195 (+) True G127134
TU162207 other downstream 142671 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 665504 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 674762 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 1008002 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 1162915 19043304 ~ 19142145 (+) True G129594

Expression Profile